Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30387.Seq
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    60   5e-10
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    35   0.011
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    31   0.19 
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    28   1.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.0  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   7.0  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 28/58 (48%), Positives = 39/58 (67%)
 Frame = -1

Query: 504 QDLIPISLTLLIVGRDIALVVAGFVIRYISLPPPRTLSRYFDVTHATAQLAPTFISKV 331
           ++ +P++L  LI+GRD+ LV A   +RY SLP P+T  R+FD    T +L PT ISKV
Sbjct: 478 RETMPLTLASLIIGRDVLLVSAVSYLRYKSLPAPKTFRRFFDFAIPTTELKPTRISKV 535



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = -2

Query: 641 VFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISLIGR 501
           ++AG TDL+DG+IAR +   S   G+ LDP+ADK L+  L I L  R
Sbjct: 433 LYAGFTDLVDGYIARKFDLGSI-AGTVLDPLADKTLMTCLTICLAVR 478



 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 757 KENVFTIPTILCITRISQCRPYLGYVII 674
           +EN+FT+P +L  +R+    P + Y+ I
Sbjct: 395 RENIFTLPNLLTFSRLLSA-PLIAYLYI 421


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -2

Query: 638 FAGITDLLDGWIARNWKGQSTKMGSFLDPMADKV 537
           FA   D LDG +AR W+G+S+ MG  LD +AD +
Sbjct: 87  FALFFDFLDGKVAR-WRGKSSLMGQELDSLADLI 119


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 653 TGLLVFAGITDLLDGWIARNWKGQSTKMGSFLDPMADKVLVATLFISL 510
           T + +++ + D  DGW AR    Q+T  G+ LD + D+   + L   L
Sbjct: 56  TIVYLYSSLLDAFDGWAARKLH-QATNFGAILDMVTDRCATSCLLCFL 102


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 535 RTLSAIGSKKEPIFVD*PFQFLAIQPSSKSVIPANTNSPVPGCN 666
           RTL AIG+    + ++ PF + A++P   + +P N    + G N
Sbjct: 141 RTLVAIGTHDFSV-MEGPFTYEALKPEEINFVPLNQTQEINGSN 183


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 325  SCSTSIGRHYAGVPSFWLC*SSSMKVLCGITAASTIVSAVSY 200
            S   SI R +A +P      S + ++LCG+ AAS   + + Y
Sbjct: 1240 SLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRY 1281


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 586 PFQFLAIQPSSKSVIPANTNSPVPGCNYSGLLHNLNMGD 702
           P + LAI P ++S +P N++  V     S + HN N  D
Sbjct: 165 PAKSLAI-PKARSSLPENSSEQVSSSFNSRVAHNRNFSD 202


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 326 VFTLLIKVGASCAVACVTSKYLLNVRGGGKLIYRMTNPATTNAISRPTISS 478
           +F+LL K+G + +  CV        R G   I+++   ATT +I    I+S
Sbjct: 213 IFSLLSKIGPNLSSVCVQYPMPELSRSGLDCIFQLCPNATTISIPANYITS 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,033
Number of Sequences: 5004
Number of extensions: 67378
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)