Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30386.Seq
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 30 0.14
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.41
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 27 0.96
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 1.3
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 27 1.3
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 2.9
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 2.9
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 3.9
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 25 5.1
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 25 5.1
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 6.7
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 6.7
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 24 8.9
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 24 8.9
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.14
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 296 CSSLSRNILRRASDSGLFYGHSVTAFDSVFLLLRTESSS 180
CS L+ N+L S SG+ +GH+ D++++ + T S +
Sbjct: 293 CSFLNHNLLSLCSPSGVLFGHN--DIDTIYVYILTHSGT 329
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 0.41
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 314 HISKIDCSSLSRNILRRASDSGLFYGHSVTAFDSVFLLLRTESSSGSDIRW 162
H +++ C S +R++L S SG + H V + L+ SS + W
Sbjct: 262 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 312
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 0.96
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +3
Query: 117 PCRREGGLCTVAEDCPSDIRARTGLCPKQQKDGIECCYGVSVKETRVGSTAENVSRKATA 296
P REG L +A C +D+ GL YG S E V + E+ +K +A
Sbjct: 208 PIGREGVLSQLATACQADLTLSAGL---------HFRYGASYNEFCVNHSPEHYLQKLSA 258
Query: 297 VNL*YMKKLQTVPKE 341
+M+ TV E
Sbjct: 259 ARAQFMEVYDTVKAE 273
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 1.3
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = -1
Query: 289 AFRETFSAVLPTLVSFTDTP*QHSIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSS 110
+F +T S +P++ S + QH IP SP+L+ S ++S + R GS
Sbjct: 321 SFIDTNSPSMPSISSVSSYQQQHRIPKLNASNYSPLLSPSSHRKTSGNLS-----RTGSE 375
Query: 109 CSMESISQKSS 77
S S+S ++
Sbjct: 376 SSAVSLSDTTN 386
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 282 EKHSPPCFRLWSLLRTLRNSIRFRLFAA 199
E P C ++LL T R+S RFRLF A
Sbjct: 335 ETTPPSCEVSYNLLLTCRSSNRFRLFPA 362
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 254 SGLFYGHSVTAFDSVFLLLRTESSSGSDIRWTVLSHSTQTTFPAA 120
SG+ + F SV +L + +SS S ++ S ST +TF +A
Sbjct: 562 SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSA 606
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 279 KHSPPCFRLWSLLRTLRNSIRFRLF 205
+H PP RLW ++RT+ NS R +
Sbjct: 130 EHLPPSIRLWDVIRTI-NSFNPRTY 153
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 147 QYTNHLPCGTDPLVQWNLFHR 85
+Y N GTDPL+++N+ HR
Sbjct: 295 RYMNLNAFGTDPLLRYNIRHR 315
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 214 PSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSS 77
PS +G L DG T LRH S E++SQ +S
Sbjct: 426 PSVPLMGTDQPLENYHDGNGEQTEECLRDLRHNQSQDFETVSQDTS 471
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 190 SPVLALISDGQSSATVHKPPSLRHGSSCSMESISQK 83
SP + +G H P HG S S +I QK
Sbjct: 569 SPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQK 604
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 84 FCEIDSIEQEDPCRREGGLC 143
FC +DS+ E P +E GLC
Sbjct: 129 FCVVDSVAVESPA-QEAGLC 147
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 5.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 270 PPCFRLWSLLRTLRN 226
PPC R+W + RT +
Sbjct: 128 PPCIRVWKMARTFNS 142
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 117 PCRREGGLCTVAEDCPSDIRARTGLCPKQQ 206
P +R+G + + + C SD R R + PK Q
Sbjct: 418 PLKRDGHV--IIDVCDSDARLRRNIVPKSQ 445
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 117 PCRREGGLCTVAEDCPSDIRARTGLCPKQQ 206
P +R+G + + + C SD R R + PK Q
Sbjct: 418 PLKRDGHV--IIDVCDSDARLRRNIVPKSQ 445
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 24.2 bits (50), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 166 DGQSSATVHKPPSLRHGSSCSM 101
+G S TVH P++ H S C++
Sbjct: 93 EGDSYITVHITPTIPHCSMCTL 114
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/53 (20%), Positives = 24/53 (45%)
Frame = -1
Query: 223 HSIPSFCCLGQSPVLALISDGQSSATVHKPPSLRHGSSCSMESISQKSSSLFP 65
H I F P+ A D +S +VH+ + ++ ++S++++ P
Sbjct: 437 HDISQFNHRNDPPITAASVDSSNSFSVHRSSTNHSSTNSGSPNLSRRNNLAIP 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,757
Number of Sequences: 5004
Number of extensions: 33969
Number of successful extensions: 119
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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