Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30385.Seq
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   3.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   3.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   3.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.6  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -3

Query: 494 CWKACSSVLKTMTSASDSL-GNKEGACEKMSVQ 399
           CWK C     T T  S SL G  E   + + ++
Sbjct: 730 CWKECPKNRPTFTELSKSLEGLLENVAQYLQIE 762


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 61  TDVKVAPNFVFGETNKSED 117
           ++  ++P+ VFG+  KSED
Sbjct: 201 SEQSLSPDTVFGDDGKSED 219


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 158 SNAGTFPAGNFFKKSSDL 105
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 158 SNAGTFPAGNFFKKSSDL 105
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 158 SNAGTFPAGNFFKKSSDL 105
           S  GT+P+ N++  +SD+
Sbjct: 12  SQHGTYPSDNYYNYTSDI 29


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 500 STCWKACSSVLKTMTSASDSLGNKEGACEKMSVQYF*G 387
           S  W+A  +VLK  T     L ++  + EK+++++  G
Sbjct: 534 SIAWRAFLAVLKRRTEIYKGLIDRIKSREKLTMKFHDG 571


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 791 SRKGFLWTPLAFQA 750
           SRKG  W+P A  A
Sbjct: 102 SRKGLFWSPAATAA 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,014
Number of Sequences: 336
Number of extensions: 4153
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)