Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30385.Seq
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   10.0 

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 234 RRSGYPSRVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 395
           R SG   ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +1

Query: 433 LPRESLADVIVFSTLLHAFQHVLDPTSVRR**TFSVGS*PSPTSRKCRPSSARSRFCAAP 612
           L  E   D  + ST  H  +     T++    T +  +  + T+     ++  +     P
Sbjct: 631 LAMERERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPP 690

Query: 613 PTYDPKKYQELAGAQNKKEGQK 678
           P  D    +EL+GA+ +KE +K
Sbjct: 691 PQVDEVDDKELSGAEEEKEVEK 712


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 84  FRIWRDQQVRRLLEEVSCRKSACIRKCRWKG 176
           F IWRD    ++ E  +   +A   +  W G
Sbjct: 32  FEIWRDSLPTKMRELNATACAALYERVEWSG 62


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 535 SVGS*PSPTSRKCRPSSARSRFCAAPPTYDPKKYQELAGAQNKK 666
           SV S P    ++        R   APP YD     + A   +KK
Sbjct: 603 SVCSSPRSEDKEVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKK 646


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 10   PENFRAYKALIAAQYSGTDVKVA 78
            PE+F A  ALI+ Q  G  + VA
Sbjct: 1620 PEHFVASYALISNQCEGDSLNVA 1642


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 680 LFCPSFLFCAPANSWYFLGSYVGGAAQKR 594
           L CP+  F  P + WY    ++ G+++++
Sbjct: 232 LLCPAQGFPVPVHRWY---KFIEGSSRRQ 257


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 776 LWTPLAFQAPPLQGQKQLPPSS 711
           LW PL+   PP    + +P ++
Sbjct: 756 LWQPLSVSIPPPPSAQNVPQNT 777


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,255
Number of Sequences: 438
Number of extensions: 5499
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)