Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30384.Seq
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 104 1e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 104 1e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 31 0.087
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 29 0.61
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 4.3
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 10.0
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 10.0
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 104 bits (249), Expect = 1e-23
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 196 XIRXTVKGGGHVAQVYAIRQLFQR 267
IR V GGGHV+Q+YAIRQ +
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 98.3 bits (234), Expect = 7e-22
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81 AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 104 bits (249), Expect = 1e-23
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 196 XIRXTVKGGGHVAQVYAIRQLFQR 267
IR V GGGHV+Q+YAIRQ +
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISK 84
Score = 98.3 bits (234), Expect = 7e-22
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
AISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81 AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 31.5 bits (68), Expect = 0.087
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = +1
Query: 37 GRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVK 216
G++K++ A G G VNG P D+ R++ K L + + + TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 217 GGGHVAQVYAI 249
GGG Q A+
Sbjct: 71 GGGPTGQSGAV 81
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 218 VVVM*HKFTLSDSYFKGSDRLLPEICR 298
V+V KF D+Y KG+ ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 255 LSDSVNLCYMTTTLDCXSDXNH-REFFLAEQ 166
LS+ N CYM + L C + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 103 RLHAAFHDHACNTQLRWRFS 44
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 138 QQSGXNQVQWAPVYTQHSMTTLAIRNCGGGFLTSEYLDGLDGLT 7
Q +G Q+ W V T L + N ++YLD +D T
Sbjct: 29 QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 415 DTRNLTVKPSRKPSGGIVAASCCH 486
D N+ VKP+ P+ + CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,293
Number of Sequences: 5004
Number of extensions: 41454
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -