Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30384.Seq
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.56
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 31 0.56
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 31 0.56
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 2.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 2.3
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80 prot... 27 6.9
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 122 bits (293), Expect = 2e-28
Identities = 52/80 (65%), Positives = 69/80 (86%)
Frame = +1
Query: 16 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ + P++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 196 XIRXTVKGGGHVAQVYAIRQ 255
IR V GGGHVAQ+YA+RQ
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQ 84
Score = 101 bits (241), Expect = 5e-22
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +3
Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
A++KAL+A+Y KYVDE SK+E+K+I YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 85 ALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 291 YVDEASKKEIKDILVQYDRSLLVADPRRCE 380
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -1
Query: 231 YMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQSGXNQVQWAPVYTQHSMTTLAIRNCGG 52
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 51 G 49
G
Sbjct: 208 G 208
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 225 TTTLDCXSDXNHREFFLAEQKD-RF--LKFVLQQSG 127
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 351 LLVADPRRCEPKKFGGPGARARY 419
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>Z36282-1|CAD45602.1| 424|Caenorhabditis elegans Hypothetical
protein K10G9.3 protein.
Length = 424
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 392
+W S+RY + AF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 393 GGP 401
GGP
Sbjct: 281 GGP 283
>AF455271-1|AAL65193.1| 424|Caenorhabditis elegans C21ORF80
protein.
Length = 424
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 219 WWSCSTSLRYQTAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 392
+W S+RY + AF +KY+D K+ D++ LV D + +P++
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280
Query: 393 GGP 401
GGP
Sbjct: 281 GGP 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,431
Number of Sequences: 27780
Number of extensions: 242727
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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