Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30383.Seq
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    60   3e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    59   3e-09
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam...    28   7.2  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 27/49 (55%), Positives = 34/49 (69%)
 Frame = +3

Query: 162 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARR 308
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH P       F   + +AR+
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARK 70



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 257 TLGMDPKFLRNQRFCKKGNLK 319
           T GMDPKFLRNQR+ +K N+K
Sbjct: 54  TRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 27/48 (56%), Positives = 33/48 (68%)
 Frame = +3

Query: 165 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEPPLAWIQNF*GIKGFARR 308
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH P       F   + +AR+
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARK 48



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 257 TLGMDPKFLRNQRFCKKGNLK 319
           T GMDPKFLRNQR+ +K N+K
Sbjct: 32  TRGMDPKFLRNQRYARKHNVK 52


>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1423

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -2

Query: 662 LTXAHSPFXVRQLLGRAIGAGPLRLLRQLAKRGMCCKAIKLGNARVFPVTTCKTTASEL* 483
           L  +  P   R+LLG   G G L +        + C     G+ ++   T+CK T  +  
Sbjct: 250 LLTSERPSKKRKLLGSDAGLGKLMVAAPCEGNALLCDFCCTGHHQLIVCTSCKATVHKKC 309

Query: 482 YDSL 471
           Y  L
Sbjct: 310 YGLL 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,345,738
Number of Sequences: 28952
Number of extensions: 285039
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)