Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30382.Seq
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07) 32 0.60
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 30 1.8
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 30 2.4
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 29 3.2
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 29 4.2
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015) 29 4.2
SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06) 29 4.2
SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6) 29 5.5
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36) 28 9.7
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2) 28 9.7
>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 37.9 bits (84), Expect = 0.009
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Frame = +3
Query: 252 FKCAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVPK----IGPGHLDNSSVGIRSALNVPK 419
FKC CG L +KTY Q K YC +H PK + L+N + + +
Sbjct: 218 FKCESCGMTLNMKTYKGYQ-----KLPYCDAHYPKTKHTVVADTLENQRIKTNTQIQSQV 272
Query: 420 SNNYVNEQIRG-YIRNSHEPE-LSPIRATNGGASTRLQQGSYSRDT 551
EQ RG Y S +PE L I ++ Q GS + T
Sbjct: 273 QYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGSRDQYT 318
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 175 FRCNEIVYQVDRVGPLKDFTFFHSGCLSVPCAEPN*P*RPITITSIGRKTKKYTALATYQ 354
F+ NE QVDR G +FTF ++P + N P R I GR+ K +A ++
Sbjct: 1103 FKINENEMQVDRYGSGVNFTFH---LKTIPEKDCNHPSRTTAINKFGRRGKTSSA---FK 1156
Query: 355 RSVRATWTTPQWASEALSTC 414
++ + Q +EA+ C
Sbjct: 1157 NALLPEYNVRQSFTEAIGEC 1176
>SB_11877| Best HMM Match : efhand (HMM E-Value=7.8e-07)
Length = 390
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 417 KSNNYVNEQIRGYIRNSHEPELSPIRATNGGAS--TRLQQGS---YSRDTPGLPVTGDST 581
+++ Y + + Y RN+ +P+ + T+G R+Q+ + YS DTPG V T
Sbjct: 139 ENSPYYKDALGRYTRNAFQPQAG-FKDTDGTYDHCPRMQEDTWWGYSADTPGREVAEAHT 197
Query: 582 ASGPSTXAHALKQTE 626
G S A ++TE
Sbjct: 198 VRGRSRKEGAARETE 212
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 418 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 454
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 145 YRPNFYESTCFRCNEIVYQVDRVGPL-KDFTFFHSGC 252
Y NF+ CFRC + G + KD TFF GC
Sbjct: 6 YSGNFWHENCFRCANCGEAIGTSGFVPKDDTFFCPGC 42
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 377 QLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQ 466
QLL H +R Q+ Q++ +Q+ Q++HQ+Q
Sbjct: 297 QLLQQHLQRQQQQQRRHQQQQQQQQLHQQQ 326
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +1
Query: 319 KTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGR 498
K TA T + S TP+ +++A PKA T +T ++ S + L+S
Sbjct: 1715 KASTDTAKVTPKASTDTAKITPKASTDAAKVTPKASTEATEMTQKFSNVPATV-ALKSSN 1773
Query: 499 PTVERPRVSSKGAIRVIP 552
+ SS A R+IP
Sbjct: 1774 VEAKITPKSSTDAARLIP 1791
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 319 KTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNCLRSGR 498
K A T + S +T TP+ +++A PKA T + + S A+ S
Sbjct: 1583 KASTEAAKVTPKASTDSTKVTPKASTDAAKVTPKASTDAAKVTPKASTDAVKVTSKASTD 1642
Query: 499 PTVERPRVSSKGAIRVIP 552
T P+ S+ A +V P
Sbjct: 1643 STKVTPKASTDAA-KVTP 1659
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/94 (29%), Positives = 37/94 (39%)
Frame = +3
Query: 408 NVPKSNNYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDSTAS 587
NV S N +RG + E +P + TRL + S P P T
Sbjct: 259 NVDSSTRERNTSMRGKPTEDEKTE-APHPRERSFSRTRLDR-SMKNSKPDKPAT------ 310
Query: 588 GPSTXAHALKQTELPESLPIGPREKPYRLATWDR 689
P +K +PES P GP+ KP +L DR
Sbjct: 311 -PDKPDKRVKPVSMPESKPAGPK-KPDKLILPDR 342
>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
Length = 779
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +1
Query: 298 TITSIGRKTKKYTA----LATYQRSVRATWTTPQWASEALS-TCPKAITTSTNRSEDTSG 462
T ++ TK Y+A +AT + AT T +++ S TCP T + S +
Sbjct: 356 TCATVATNTKCYSATRATVATNTKCYSATCATMATSTKCYSVTCPTVATNTKGYSVMCAT 415
Query: 463 TAMSQNCLRSGRPTV 507
A + C R+ R TV
Sbjct: 416 VATNTKCYRAMRGTV 430
>SB_57319| Best HMM Match : Pox_A_type_inc (HMM E-Value=6.3e-06)
Length = 348
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 567 TGDSTASGPSTXAHALKQTELPESLPIGPREKPYRLATWD 686
TG T P T + + PE++P PR KP +A D
Sbjct: 308 TGPETFPRPETTPKSSQLIPGPETIPKSPRNKPQGIAVMD 347
>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
Length = 315
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 424 ITTSTNRSE--DTSGTAMSQNCLRSGRPTVERPRVSSKGAIRVI 549
I TST R+ +T + + Q C R P VE P + IRVI
Sbjct: 165 IPTSTQRTRRIETKNSFVEQRCQRIALPEVEDPALPPPYVIRVI 208
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Frame = +3
Query: 330 VYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNYVNEQIR-----GYIRNSHEPELSPIR 494
V S + H ++S IRS SN +NE+++ GY +S L R
Sbjct: 220 VKAKSSEETLSQAHFFSTSEDIRSTSRTT-SNEELNERVKSPPPAGYSDSSSASSLDSAR 278
Query: 495 ATNGGASTRLQQGSYSRDTPGLPVTGDSTASGPSTXAHALKQTELPE 635
+ + + PG PV+ S++ + + A Q +L E
Sbjct: 279 SPSPAKNQEKLSRRVKSPPPGSPVSSSSSSDRTKSPSPAKNQGKLSE 325
>SB_34782| Best HMM Match : zf-CHY (HMM E-Value=0.36)
Length = 967
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Frame = +3
Query: 255 KCAVCGTKLTLKTYYNN--QHWTEDK------EVYCSSHVP 353
KC VCGT+L L+ Y + Q ++ D+ +V C +HVP
Sbjct: 927 KCTVCGTQLLLQGYTKSHPQCFSIDRLDDGSLQVECQTHVP 967
>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
Length = 267
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 298 TITSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTA 468
T T+ T YT+ +Y + T +TP + S TC + T++T+ + TS T+
Sbjct: 168 TSTTSYTSTTSYTSTTSYTPTPSYT-STPSYTSTTSYTCTTSYTSTTSYTCTTSYTS 223
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,793,241
Number of Sequences: 59808
Number of extensions: 542513
Number of successful extensions: 1603
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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