Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30382.Seq
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33890.2 68417.m04809 expressed protein 38 0.010
At4g33890.1 68417.m04808 expressed protein 38 0.010
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 31 0.64
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 31 0.64
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ... 29 3.4
At4g03000.2 68417.m00408 expressed protein contains similarity t... 29 4.5
At4g03000.1 68417.m00407 expressed protein contains similarity t... 29 4.5
At3g24880.1 68416.m03120 expressed protein 29 4.5
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 29 4.5
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 28 6.0
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ... 28 6.0
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 6.0
At3g02180.2 68416.m00193 expressed protein 28 6.0
At3g02180.1 68416.m00192 expressed protein 28 6.0
At4g09690.1 68417.m01592 DC1 domain-containing protein contains ... 28 7.9
At3g43320.1 68416.m04579 hypothetical protein 28 7.9
At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase... 28 7.9
>At4g33890.2 68417.m04809 expressed protein
Length = 342
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +3
Query: 435 NEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDSTASGPSTXAHAL 614
N IR I+N+ + SP GG+ R G +++ P+ GDS S + +
Sbjct: 65 NRLIRSIIKNACIAK-SPPFIKKGGSFVRFGNGDSKKNSQIQPLHGDSAFSPSTRKCRSR 123
Query: 615 KQTELPESLPIGPREKPYRLATWDRDGANQ 704
K + P P+GP KP+ L T + + ++
Sbjct: 124 KLRDRPS--PLGPLGKPHSLTTTNEESMSK 151
>At4g33890.1 68417.m04808 expressed protein
Length = 342
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +3
Query: 435 NEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDSTASGPSTXAHAL 614
N IR I+N+ + SP GG+ R G +++ P+ GDS S + +
Sbjct: 65 NRLIRSIIKNACIAK-SPPFIKKGGSFVRFGNGDSKKNSQIQPLHGDSAFSPSTRKCRSR 123
Query: 615 KQTELPESLPIGPREKPYRLATWDRDGANQ 704
K + P P+GP KP+ L T + + ++
Sbjct: 124 KLRDRPS--PLGPLGKPHSLTTTNEESMSK 151
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
+SI ++T+ T+LA+ + + + P+ ASE +S PKA ST+ + S +
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615
Query: 484 LRSGR 498
LRS +
Sbjct: 1616 LRSDK 1620
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 304 TSIGRKTKKYTALATYQRSVRATWTTPQWASEALSTCPKAITTSTNRSEDTSGTAMSQNC 483
+SI ++T+ T+LA+ + + + P+ ASE +S PKA ST+ + S +
Sbjct: 1558 SSITQRTETATSLASDAEATK--FALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTA 1615
Query: 484 LRSGR 498
LRS +
Sbjct: 1616 LRSDK 1620
>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
protein peroxisomal Ca-dependent solute carrier -
Oryctolagus cuniculus, EMBL:AF004161
Length = 381
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 654 AARLVGFLEALFALRRVPMWRGRWPSNLPLLV-VQGYHANSSLAGDAW 514
A + +GF+EA+ + + +G W NLP ++ V Y A LA +++
Sbjct: 127 AKKAIGFIEAITLIAKEEGVKGYWKGNLPQVIRVLPYSAVQLLAYESY 174
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 408 NVPKSNNYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDSTAS 587
N PKS++ N + + N+ + P++ N + S TPG V STAS
Sbjct: 237 NPPKSSDADNP--KAPVSNTQSKQSEPVKFGNFANVNNSKNPHASGATPGKEVFSVSTAS 294
Query: 588 GPSTXAHAL 614
G T + +L
Sbjct: 295 GEGTKSASL 303
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 408 NVPKSNNYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDSTAS 587
N PKS++ N + + N+ + P++ N + S TPG V STAS
Sbjct: 237 NPPKSSDADNP--KAPVSNTQSKQSEPVKFGNFANVNNSKNPHASGATPGKEVFSVSTAS 294
Query: 588 GPSTXAHAL 614
G T + +L
Sbjct: 295 GEGTKSASL 303
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 28.7 bits (61), Expect = 4.5
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Frame = +3
Query: 363 PGHLDNSSVGIRSALNVPKSNNYVNEQIRGYIRNSHEPELSPI--RATNGGASTRLQ--- 527
PG L S +S L P+++ ++QI + NS LS + NGG T L
Sbjct: 1202 PG-LHVSKYSCKSWLGFPENDGRDSKQIVP-VHNSQVMALSQVFPNNLNGGVLTPLDVCD 1259
Query: 528 -----QGSYSRDTPGLPVTGDSTASGPSTXAH 608
Q +S + PGLP+ T P++ AH
Sbjct: 1260 ASTSGQDVFSLENPGLPMLNQGTPVLPTSGAH 1291
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +2
Query: 443 DQRIHQEQP*ARTVSD------PGDQRWSVHASPARE 535
D+ QE P + TVSD PG RWS++ PA+E
Sbjct: 610 DKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAKE 646
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +3
Query: 489 IRATNGGASTRLQQGSYSRDTPGLPVTGDSTASGPSTXAHALKQTELPESLPIGPREKPY 668
+R++NG S + S T D+T S P + Q P + + PR++
Sbjct: 229 LRSSNGSLSHMVNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREA 288
Query: 669 RL 674
R+
Sbjct: 289 RV 290
>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 415
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 654 AARLVGFLEALFALRRVPMWRGRWPSNLPLLV-VQGYHANSSLAGDAW-TLHRWSPGSET 481
A + +GF+EA+ + + +G W NLP ++ + Y A A + + L R G +
Sbjct: 155 AKKAIGFIEAITLIGKEEGIKGYWKGNLPQVIRIVPYSAVQLFAYETYKKLFRGKDGQLS 214
Query: 480 VL 475
VL
Sbjct: 215 VL 216
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 323 QRSILL*PRTKDRSGPLGQLLSGHQKRSQRAQKQ*LRQRTDQRIHQEQP 469
Q LL R + + Q HQ++ Q+ Q+Q +Q+ Q+ HQ QP
Sbjct: 112 QMQQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQP 160
>At3g02180.2 68416.m00193 expressed protein
Length = 122
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 423 NNYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDST 581
NN VNE GY+ S +P S A G +T + + T G P+T +T
Sbjct: 8 NNGVNESSLGYLFGSGQP--SSAAAATMGTTTTTTTTTTTDGTGGRPITTTTT 58
>At3g02180.1 68416.m00192 expressed protein
Length = 122
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 423 NNYVNEQIRGYIRNSHEPELSPIRATNGGASTRLQQGSYSRDTPGLPVTGDST 581
NN VNE GY+ S +P S A G +T + + T G P+T +T
Sbjct: 8 NNGVNESSLGYLFGSGQP--SSAAAATMGTTTTTTTTTTTDGTGGRPITTTTT 58
>At4g09690.1 68417.m01592 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 345
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 258 CAVCGTKLTLKTYYNNQHWTEDKEVYCSSHVP 353
C +CG + + YY+ + D ++YC+ + P
Sbjct: 83 CDLCGKSINVNLYYSCKICDFDVDLYCAKYPP 114
>At3g43320.1 68416.m04579 hypothetical protein
Length = 510
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 418 KAITTSTNRSEDTSGTAMSQNCLRSGRPTVERPRVSSKGAIRVIP 552
KA+ T S D SG C +S PT ++ SK A +VIP
Sbjct: 444 KAVETDFQTS-DISGVGGRNRCPKSSHPTRKQQPRGSKTAHKVIP 487
>At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase
large subunit 2 (APL2) / ADP-glucose pyrophosphorylase
identical to SP|P55230
Length = 518
Score = 27.9 bits (59), Expect = 7.9
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Frame = +3
Query: 300 NNQHWTEDKEVYCSSHVPKIGPGHLDNSSVGIRSALNVPKSNNYVNEQIRGYI-RNSHEP 476
NN+ +E + + V K P HL + +RSA N + + ++ + SHEP
Sbjct: 18 NNEIVSERVSAFWGTQVVK--PNHLRTTK--LRSAPQKKIQTNLIRSVLTPFVDQESHEP 73
Query: 477 ELSPIRAT---------NGGASTRLQQGSYSRDTPGLPVTG 572
L A GGA TRL + R P +P+ G
Sbjct: 74 LLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,381
Number of Sequences: 28952
Number of extensions: 363310
Number of successful extensions: 1082
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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