Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30379.Seq
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   4.5  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    23   7.8  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 654  LHRDCFIFYVKKCYG 698
            LH DC+    KKC+G
Sbjct: 2278 LHTDCYSTSAKKCHG 2292


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 654  LHRDCFIFYVKKCYG 698
            LH DC+    KKC+G
Sbjct: 2279 LHTDCYSTSAKKCHG 2293


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 549 IRNSFRNRKLSSRFGQVKCPSS 484
           +RN+FR+R+    FGQ +  +S
Sbjct: 546 VRNTFRSRRTQLGFGQERTGTS 567


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,007
Number of Sequences: 2352
Number of extensions: 14064
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)