Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30377.Seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    84   2e-17
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    36   0.004
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.25 
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    26   5.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.5  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   9.5  

>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
 Frame = +3

Query: 255 HMXCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSXADIKTLAECDXXXAVRXVQE 434
           H+ C+ F+RPT   + LL  ELRDPKY  Y +YF+NV+  + ++ LAE D   AV+ +QE
Sbjct: 63  HLKCVAFLRPTPTTLRLLCEELRDPKYAEYHLYFTNVIPKSFLERLAESDDFEAVKSIQE 122

Query: 435 VFADYLAVDRXPVLFQYCWMPPRS--GWNQQHLQRVSQGLXALPPVSXRXEPAFANEGAS 608
            F DYL V+     F    +   S   W      R  QG+ +L  +S + +P    +  S
Sbjct: 123 FFLDYLVVNNDLASFNIPHIIEDSPDNWQDGAFHRTHQGIISL-LLSLKKKPVIRYDNNS 181

Query: 609 XPC 617
             C
Sbjct: 182 LLC 184



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/51 (29%), Positives = 34/51 (66%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYL 213
           M+++ A + Y  ++       +K++L++++TT IVS   +QS +L++++YL
Sbjct: 1   MDLVSASQSYFKRIFQEVSD-LKILLLEEDTTKIVSSCITQSNLLEQQIYL 50


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 267 IVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSXADIKTLAE-CDXXXAVRXVQEVFA 443
           I F++PT ENI L+  +L    Y   ++ FS+ +S A ++  AE          + +V+ 
Sbjct: 92  IYFVQPTQENIELIIEDLSKGLYESAYVCFSSTISRALLEQFAELASKTNTSHMIHQVYD 151

Query: 444 DYL 452
            YL
Sbjct: 152 QYL 154


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 280 RIKTMHXMCSCYPIWHDCLSSRISKLPSVRFP 185
           R++ +H + SC+P  HD  S +  K P   FP
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFP 461


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 488 TILKENRXSVHSQVVSKNFLDLSDSXXXITFGQSFD 381
           ++  EN  S   + +S   +D++DS     FG +FD
Sbjct: 119 SVFTENLYSTIQEFLSAQKVDIADSKNTYVFGSTFD 154


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 213 IREDRQSCQMG*HEHMXCIVFIRPTSENIALLSRELRDPKYG 338
           IR D   C     EH    +   P +E  A+L+ +L +PK G
Sbjct: 122 IRSDLLKCMS---EHPDKSLICHPLAEKFAILASKLHNPKVG 160


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -2

Query: 494 HPTILKENRXSVHSQVVSKNFLDLSDSXXXITFGQSFDVC 375
           HPT+LKE    +H   V +  L L       T G     C
Sbjct: 176 HPTMLKERSYELHRVEVLRLLLSLFSEEIYRTDGNGSSCC 215


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = -2

Query: 497 RHPTILKENRXSVHSQVVSK---NFLDLSDSXXXITFGQSFDVCXRNYITEIYKVNTI 333
           +H     EN    +S V+ K   N   +      + F  SFDV  R Y T  YK + I
Sbjct: 334 KHVVEFLENLSLKNSSVLKKILNNLALMKKKELNLNFLPSFDVWDREYYTARYKQSLI 391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,689
Number of Sequences: 5004
Number of extensions: 42548
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)