Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30377.Seq
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0030 - 14083117-14083166,14083620-14083689,14083777-140838...    66   2e-11
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    33   0.26 
09_02_0249 + 6240237-6240287,6241489-6241764                           28   5.6  
05_07_0165 + 28107093-28108457                                         28   5.6  

>02_03_0030 -
           14083117-14083166,14083620-14083689,14083777-14083857,
           14083940-14084065,14084916-14085143,14085246-14085325,
           14086567-14086768,14086857-14086946
          Length = 308

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +3

Query: 255 HMXCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSXADIKTLAECDXXXAVRXVQE 434
           H+  + F+RP+S+N+  L R L  P++  Y ++FSNV+    I+ LA+ D    V+ VQE
Sbjct: 66  HLKAVYFLRPSSDNVQKLRRHLAAPRFAEYHLFFSNVLKIPQIQVLADSDEQEVVQQVQE 125

Query: 435 VFADYLAVD 461
            +AD+ A+D
Sbjct: 126 FYADFCAID 134



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/57 (45%), Positives = 42/57 (73%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           M +I  ++ YI +M     PGMKV+++D +T  +VS+VYSQS++L+KEV+L E +D+
Sbjct: 1   MTLITLIRDYIDRMLHDI-PGMKVLVLDPDTVGMVSVVYSQSDLLRKEVFLVETVDN 56


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +3

Query: 258 MXCIVFIRPTSENIALLSREL--RDPKYGVYFIYFSNVVSXADIKTLAECDXXXA-VRXV 428
           M  I FI+PT ENI +   ++  + P Y   +++FS+ V    +  + +     A +  +
Sbjct: 472 MDAIYFIQPTKENIRIFMSDMSGKIPLYKKAYVFFSSPVQRELVAQIKKDSNVRARIGAL 531

Query: 429 QEVFADYLAVD 461
            E+  +Y A+D
Sbjct: 532 SEMNLEYFAID 542


>09_02_0249 + 6240237-6240287,6241489-6241764
          Length = 108

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 328 GSLSSRDNRAMFSDVGRIKTMHXMCSCYPIW 236
           G+ +SR N A   D+ R +T   MC+  P W
Sbjct: 42  GTKNSRHNSATGMDLSRAQTSGSMCAAQPHW 72


>05_07_0165 + 28107093-28108457
          Length = 454

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 494 ASTVGVEPTA-SPTSFSRSARAPSC 565
           AS   VEP A SPTS +R+A AP C
Sbjct: 71  ASVFPVEPAAVSPTSSTRTATAPIC 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,333
Number of Sequences: 37544
Number of extensions: 263499
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)