Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30377.Seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)                     94   8e-20
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            30   1.9  
SB_38211| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)                29   3.3  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      28   5.7  
SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)              28   7.6  

>SB_49958| Best HMM Match : Mak10 (HMM E-Value=7.7)
          Length = 176

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 44/57 (77%), Positives = 50/57 (87%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDS 231
           MNVI AVK Y+TKM   SG GMKV+LMDKETT IVSMVYSQ+E+LQKEVYLFER+D+
Sbjct: 1   MNVILAVKQYVTKMIEESGAGMKVLLMDKETTGIVSMVYSQTEVLQKEVYLFERVDT 57



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +3

Query: 375 ADIKTLAECDXXXAVRXVQEVFADYLAV 458
           A I+ LAE D    VR VQE +ADY A+
Sbjct: 77  ASIRALAEADDQEVVREVQEYYADYFAI 104


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 192 DFRLTVHHTHYAGSFFIH*YHFHSRAAXXXHFSNVHFNCLYHIHFD 55
           D+    H+ +Y    + + YH+H       H+ + H++  YH H+D
Sbjct: 303 DYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHY-DYHYHYDYHYHYD 347


>SB_38211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 462 RXPVLFQYCWMPPRSGWNQQHLQRVSQGLXA 554
           R PV+F+   +PPR G ++++ + + +GL A
Sbjct: 56  RKPVVFEDAVLPPRFGLSREYEEEIREGLEA 86


>SB_12344| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
          Length = 341

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 334 YLGSLSSRDNRAM---FSDVGRIKTMHXMCSCYPIWHDCLSSRISKLPSVRFPID 179
           YL SL  R + ++   + + GR+ T+      +P + D ++  IS++P V  P+D
Sbjct: 207 YLRSLRKRQDMSVNTTWPNFGRVTTLVAQDMTFPSYDDVINDVISRVPFVDPPLD 261


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 164 TMLVVSLSINITFIPGPLSXXILVMYIL--TACITFILIKLSLFIS 33
           T  + SLS ++TF+ GPL+  +   Y +   A +  IL  L LF S
Sbjct: 57  TAWIASLSFSLTFMLGPLTTSLCTKYGVRSVAVLGAILFALGLFCS 102


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 180 TVHHTHYAGSFFIH*YHFHSRAAXXXHFSNVHFNCLY--HIHFD*IILI 40
           ++HH +    +F H Y++H +     H  + H +  Y  H H D  I+I
Sbjct: 79  SIHHRYR--DYFYHSYNYHHKWQHYHHHHHYHHHLDYDHHYHHDLFIII 125


>SB_41402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/77 (18%), Positives = 34/77 (44%)
 Frame = +1

Query: 25  ILCEINKDNLIKMNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKE 204
           ++CE+ KD+  K  +   V + + K       G ++      TT   + +  ++E+++  
Sbjct: 15  LICELGKDDFKKTGLPMCVAIKLQKAIESLDKGKELKTSLDSTTIKANKILKKTELIELS 74

Query: 205 VYLFERIDSHAKWDNMN 255
               E   +++ W+  N
Sbjct: 75  KKSLEAQFANSNWNEFN 91


>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
          Length = 309

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 500 WRHPTILKENRXSVHSQVVSKNFLDL-SDSXXXITFGQSFDVCXRNYITEIYKVNTIFRI 324
           W  P I K    S+     S     L SDS     + Q+  +C    I E++KV ++ +I
Sbjct: 226 WNSPNISKYKNPSLKFYDASYPDKQLCSDSMEHAAYSQAIIMCSLCKIDEVWKVFSLRKI 285

Query: 323 SQ 318
           SQ
Sbjct: 286 SQ 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,183,560
Number of Sequences: 59808
Number of extensions: 305605
Number of successful extensions: 719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)