Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30377.Seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical pr...    62   3e-10
Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
 Frame = +3

Query: 252 EHMXCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSXADIKTLAECDXXXAVRXVQ 431
           +++ C+VF+RPT +NI  L +EL++P++  Y++YF+N ++  D+K LAE D    VR VQ
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETVREVQ 124

Query: 432 EVFADYLAVDRXPVLFQYCWMPPRS-GWNQQHLQRVSQGLXALPPVSXRXEPAFANEGAS 608
           EVF D + + +         +   S    ++  +R+  G+ AL  +  +  PA   + +S
Sbjct: 125 EVFLDGVPIRKDLFTLNLTHIFDSSFTLKEEAAERIKCGIIAL-LLQLKKAPAVRYQKSS 183

Query: 609 XPC 617
             C
Sbjct: 184 PSC 186



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64


>U41030-5|AAM51527.1|  132|Caenorhabditis elegans Hypothetical
           protein C44C1.4b protein.
          Length = 132

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +1

Query: 61  MNVIQAVKMYITKMXXXSGPGMKVILMDKETTSIVSMVYSQSEILQKEVYLFERIDSHAK 240
           M+++Q+ +  I  M   +G  MK++LMD ETT  VS  ++QSE++QKEVY+F+RI++   
Sbjct: 1   MDLVQSSRKLIQDMIQLAGSQMKLLLMDGETTPTVSCAFAQSEVMQKEVYIFDRIENKTS 60

Query: 241 WDNM 252
            +N+
Sbjct: 61  SENI 64



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 23/59 (38%), Positives = 41/59 (69%)
 Frame = +3

Query: 252 EHMXCIVFIRPTSENIALLSRELRDPKYGVYFIYFSNVVSXADIKTLAECDXXXAVRXV 428
           +++ C+VF+RPT +NI  L +EL++P++  Y++YF+N ++  D+K LAE D    +  V
Sbjct: 65  KNLKCVVFVRPTPKNIERLVKELQEPRFSQYYLYFTNTINKYDVKRLAEADKNETIPKV 123


>Z77134-1|CAB00871.1|  293|Caenorhabditis elegans Hypothetical
           protein R09H10.2 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 388 VLMSALETTLLKYIK*TPYLGSLSSRDN-RAMFSDVGRIKTMHXMCSCYPIWHDCLSSRI 212
           V  +AL  +LL YI       S+S+    R  FSD      +  + S Y  WHDCL   I
Sbjct: 8   VFFAALSISLLLYI-------SVSNTPTPRFNFSD----SAVSKVWSNYTAWHDCLMQNI 56

Query: 211 SKL 203
           SKL
Sbjct: 57  SKL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,979,091
Number of Sequences: 27780
Number of extensions: 242281
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)