Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30375.Seq
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...   122   4e-29
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...   122   4e-29
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19...    41   1e-04
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom...    27   1.7  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    27   2.2  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   2.9  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   3.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   5.1  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   5.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   9.0  

>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score =  122 bits (293), Expect = 4e-29
 Identities = 53/58 (91%), Positives = 56/58 (96%)
 Frame = +3

Query: 255 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 428
           EMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 96  EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 153



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 44/82 (53%), Positives = 54/82 (65%)
 Frame = +1

Query: 10  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 189
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 14  LRKKRSFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKT 73

Query: 190 EAPPNEKPEIVKTHLXXMIIVP 255
           EAP NEKP  VKTHL  MII+P
Sbjct: 74  EAPLNEKPATVKTHLRNMIILP 95


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score =  122 bits (293), Expect = 4e-29
 Identities = 53/58 (91%), Positives = 56/58 (96%)
 Frame = +3

Query: 255 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 428
           EMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TYKP KHGRPGIGATHSSRFIPLK
Sbjct: 97  EMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154



 Score = 91.1 bits (216), Expect = 9e-20
 Identities = 44/82 (53%), Positives = 54/82 (65%)
 Frame = +1

Query: 10  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 189
           L+KKR FR F YRGV+L+QLLD+  EQL++L H         GL       ++KLR+AK 
Sbjct: 15  LRKKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKS 74

Query: 190 EAPPNEKPEIVKTHLXXMIIVP 255
           EAP NEKP  VKTHL  MII+P
Sbjct: 75  EAPLNEKPATVKTHLRNMIILP 96


>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
           S19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +3

Query: 258 MVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 365
           MVG+   ++NGK++  V+I  +MIGH LGEF+ T K
Sbjct: 63  MVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98


>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 11  SRKSVFSGSSLTGELISISSLICPMSNSWN 100
           S+ +  +   +TG +++ISS +C + N +N
Sbjct: 145 SQAAALASKDITGTIVAISSELCAVENQFN 174


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 421 GMNLELCVAPIPGLPCFTGLYVTENS 344
           G+N+ LCV   PG P  TG  ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 412 LELCVAPIPGLPCFTGLYVTE 350
           LELC    PG+P   G++  E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = +3

Query: 255 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 404
           E+  + VG+YNGK  F +  + P+ +      H L E ++   KP++   PG+  TH
Sbjct: 23  EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   HETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMH 108
           H  L +K I       G+D+D L D+ NE+   ++H
Sbjct: 10  HAKLDEKIISSYNDANGLDIDDLWDIYNEKTRRMIH 45


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 285 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 371
           N +TF+  E   E     + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 139 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 234
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,996
Number of Sequences: 5004
Number of extensions: 31285
Number of successful extensions: 79
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)