Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30375.Seq
         (518 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p pro...   139   2e-33
AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB...   139   2e-33
AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA...   139   2e-33

>AY070991-1|AAL48613.1|  148|Drosophila melanogaster RE08270p
           protein.
          Length = 148

 Score =  139 bits (336), Expect = 2e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +1

Query: 4   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 183
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 7   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 66

Query: 184 KKEAPPNEKPEIVKTHLXXMIIVP 255
           KKEAPPNEKPEIVKTHL  MIIVP
Sbjct: 67  KKEAPPNEKPEIVKTHLRNMIIVP 90



 Score =  118 bits (283), Expect = 6e-27
 Identities = 50/58 (86%), Positives = 55/58 (94%)
 Frame = +3

Query: 255 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 428
           EM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 91  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148


>AE013599-2306|AAM68504.1|  147|Drosophila melanogaster CG8332-PB,
           isoform B protein.
          Length = 147

 Score =  139 bits (336), Expect = 2e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +1

Query: 4   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 183
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 6   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 65

Query: 184 KKEAPPNEKPEIVKTHLXXMIIVP 255
           KKEAPPNEKPEIVKTHL  MIIVP
Sbjct: 66  KKEAPPNEKPEIVKTHLRNMIIVP 89



 Score =  118 bits (283), Expect = 6e-27
 Identities = 50/58 (86%), Positives = 55/58 (94%)
 Frame = +3

Query: 255 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 428
           EM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 90  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 147


>AE013599-2305|AAF57984.1|  148|Drosophila melanogaster CG8332-PA,
           isoform A protein.
          Length = 148

 Score =  139 bits (336), Expect = 2e-33
 Identities = 66/84 (78%), Positives = 70/84 (83%)
 Frame = +1

Query: 4   ETLKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 183
           E LKKKR F+KFTYRGVDLDQLLDMPN QL+ELMH         GLKRKPMAL+KKLR+A
Sbjct: 7   ENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKA 66

Query: 184 KKEAPPNEKPEIVKTHLXXMIIVP 255
           KKEAPPNEKPEIVKTHL  MIIVP
Sbjct: 67  KKEAPPNEKPEIVKTHLRNMIIVP 90



 Score =  118 bits (283), Expect = 6e-27
 Identities = 50/58 (86%), Positives = 55/58 (94%)
 Frame = +3

Query: 255 EMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 428
           EM GSI+G+YNGK F QVE+KPEMIGHYLGEF++TYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 91  EMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLK 148


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,007,470
Number of Sequences: 53049
Number of extensions: 354293
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)