Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30375.Seq
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.6  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = -1

Query: 488 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 384
           IV+   FC+ ++   + +  ++ ++   +C T++G
Sbjct: 4   IVVIFAFCICVNAMTIEELKIQLHDVQEICKTESG 38


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  RKSVFSGSSLTGELISISSLICPMSNSW 97
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  RKSVFSGSSLTGELISISSLICPMSNSW 97
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  RKSVFSGSSLTGELISISSLICPMSNSW 97
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 277 RKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  RKSVFSGSSLTGELISISSLICPMSNSW 97
           RKS  S +SL   LI   ++ CP+  SW
Sbjct: 226 RKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 368 CKAR*TRYRCYTQLKVHS 421
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 488 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 384
           IV+   FCV +    + +     +   +VC T+TG
Sbjct: 4   IVLIFGFCVCVGALTIEELKTRLHTEQSVCKTETG 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 452 LEVVLDALLERNEP*AVCSTDTGSTVLYRL 363
           L V+++ LL       VC   T ++ LYRL
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRL 40


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = -1

Query: 515 FFFCYTSYFIVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTGSTVLY 369
           FF C+T Y+ V+S  + +  +    +D  +++      C+    + ++Y
Sbjct: 269 FFICWTPYY-VMSLWYWIDRNSAYKIDQRIQKGLFLFACTNSCMNPIVY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,973
Number of Sequences: 438
Number of extensions: 2161
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)