Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30374.Seq
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 89 2e-18
08_02_1181 - 24985963-24986242,24987109-24987197 88 4e-18
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 74 7e-14
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 27 5.6
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 7.4
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 27 9.8
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +1
Query: 100 IVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
+VTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD +LNK
Sbjct: 16 VVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNK 66
Score = 43.6 bits (98), Expect = 8e-05
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +3
Query: 147 CWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDD 326
C K P + + K K G L + +WS G+R+VP ND+
Sbjct: 32 CTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDE 91
Query: 327 EDSAHKLFTLVTY--VPVASIKGLQTENVD 410
ED+ +L++LVT VP +KGL T+ V+
Sbjct: 92 EDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 87.8 bits (208), Expect = 4e-18
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +1
Query: 94 KRIVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNK 252
+ +VTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +LNK
Sbjct: 12 EEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNK 64
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 147 CWI*KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDD 326
C K P + + K K G + L + +WS G+R+VP ND+
Sbjct: 30 CTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDE 89
Query: 327 EDSAHKLFTLVTY--VPVASIKGLQTENVD 410
ED+ +L++LVT VP +KGL T+ VD
Sbjct: 90 EDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 73.7 bits (173), Expect = 7e-14
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 18/78 (23%)
Frame = +1
Query: 73 KKRQISHKR--IVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKF 198
KKR ++ +VTREYT+NLHKRLHG FKK+AP AIKEIRKF
Sbjct: 4 KKRGAGTRKDEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKF 63
Query: 199 AEKQMGTPDIRVDTRLNK 252
A+K MGT DIR+D +LNK
Sbjct: 64 AQKAMGTTDIRIDVKLNK 81
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +3
Query: 159 KACPKSNQRNPKVR*KTDGNSGHSSRHSLKQILWSKGVRNVPFXXXXXXXXXXNDDEDSA 338
K P + + K K G + L + +W+ G+R+VP ND+ED+
Sbjct: 51 KKAPNAIKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAK 110
Query: 339 HKLFTLVTY--VPVASIKGLQTENVD 410
+L++LVT +P +KGL T+ V+
Sbjct: 111 EELYSLVTVAEIPAEGLKGLGTKVVE 136
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 271 TPLDQRICLSECLLECPEFPSV 206
T D I EC ++CPEFP +
Sbjct: 755 TSSDAEIIFMECGIDCPEFPEL 776
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 121 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 225
+N+ ++G GF A + E+ K A KQ+ PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 274 LTPLDQRICLSECLLECPEFPSV 206
L +D RI ECLL+ P FPS+
Sbjct: 926 LALVDLRIKNCECLLDLPSFPSL 948
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,584,504
Number of Sequences: 37544
Number of extensions: 190421
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -