Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30371.Seq
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 136 3e-33
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 83 5e-17
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 82 9e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 82 9e-17
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 76 5e-15
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 73 6e-14
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 62 8e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 62 1e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 37 0.003
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 2.8
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 3.7
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.7
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 6.5
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 8.6
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 136 bits (329), Expect = 3e-33
Identities = 69/107 (64%), Positives = 88/107 (82%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ +L+VEHPA KVLVELAQ QD+EVGDGTTSVVIIAAELL+ A+ELVK KIHPT+II+GY
Sbjct: 67 LSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGY 126
Query: 428 RLACKEAVKYIQDNLTVTVESLGRAVSIQHRPKQPMXSKLIGADAGF 568
RLA +EAVK++ D L+ +V+SLG+ S+ + K M SK+IG D+ F
Sbjct: 127 RLAIREAVKFMTDVLSCSVDSLGKE-SLINVAKTSMSSKIIGNDSDF 172
Score = 83.4 bits (197), Expect = 3e-17
Identities = 40/58 (68%), Positives = 46/58 (79%)
Frame = +3
Query: 78 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
L ++G + G+ VR QNV+ N+VKSSLGPVGLDKMLVDDIGDVTVTNDGATIL
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 82.6 bits (195), Expect = 5e-17
Identities = 37/68 (54%), Positives = 53/68 (77%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K + +++ AAKVLV ++++QD+EVGDGTTSV + AAELL+ A+ +V KIHP II GY
Sbjct: 67 LKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGY 126
Query: 428 RLACKEAV 451
R+A K A+
Sbjct: 127 RIATKTAI 134
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 AGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKML-VDDIGDVTVTNDGATILK 254
+G + G+ R + + ++VKS+LGP G+DK+L + GD+ VTNDGATILK
Sbjct: 12 SGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILK 68
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 81.8 bits (193), Expect = 9e-17
Identities = 40/101 (39%), Positives = 61/101 (60%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ +EVEH AK+LV+L++ QD+E+GDGTT VV++A LL+ A+ L+ IHP I GY
Sbjct: 80 LDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
Query: 428 RLACKEAVKYIQDNLTVTVESLGRAVSIQHRPKQPMXSKLI 550
AC+ AVK++ V S ++ K + SK++
Sbjct: 140 EKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVV 180
Score = 52.8 bits (121), Expect = 5e-08
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +3
Query: 108 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
D V++ +++ NIV++SLGP GLDK+L+ G++TVTNDGATIL
Sbjct: 34 DAVKS-HILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATIL 80
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 81.8 bits (193), Expect = 9e-17
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
++ +EV HPAAK ++ELA+ QDEEVGDGTTSV+I+A E+L A L+ KIHP +I +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 428 RLACKEAVKYIQDNLTVTV 484
+ A ++A+ I D +T+ V
Sbjct: 125 KQALEDALSII-DEITLPV 142
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 78 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
++ G R G + N+ +++++ LGP + KML+D +G V +TNDG IL+
Sbjct: 8 MNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILR 66
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 76.2 bits (179), Expect = 5e-15
Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K+L++ HPAAK LV++A+ QD EVGDGTTSVV+ A ELL+ A V+ + II GY
Sbjct: 70 MKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGY 129
Query: 428 RLACKEAVKYIQD-NLTVTVESLGRAVSIQHR-PKQPMXSKLIGADAGF 568
R A + AV I++ + + + G+ + + M SKLI +++ F
Sbjct: 130 RKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTF 178
Score = 49.6 bits (113), Expect = 5e-07
Identities = 19/43 (44%), Positives = 32/43 (74%)
Frame = +3
Query: 126 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
N+ + ++++LGP+G DK++VDD G+V ++NDGATI+K
Sbjct: 29 NINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMK 71
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 72.5 bits (170), Expect = 6e-14
Identities = 42/108 (38%), Positives = 63/108 (58%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K L V HPAAK+LV+L+ QD E GDGTTSVVI+A +L A++L+K IHPT I +
Sbjct: 65 LKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESF 124
Query: 428 RLACKEAVKYIQDNLTVTVESLGRAVSIQHRPKQPMXSKLIGADAGFL 571
+ A V +++N + +E L S+ + SK++ + L
Sbjct: 125 QRAAGFTVDCMKEN-ALAIE-LSDRESLLRAATTSLNSKIVSQYSNLL 170
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +3
Query: 114 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
VR N+M + +++SLGP G+DKM+ G+V +TNDGATILK
Sbjct: 20 VRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 62.1 bits (144), Expect = 8e-11
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
I+ LEV HPAAK++V+ Q Q+ E+GD VV+ ELL A+ +++ + P I GY
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 428 RLACKEAVKYIQDNLTVTVESL 493
+A ++ +++ +E++
Sbjct: 132 EMALSHTMEVLEEICADKIETV 153
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 156 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
I ++SLGP G +K++V+ + +TND ATI++
Sbjct: 41 ITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIR 73
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.7 bits (143), Expect = 1e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +2
Query: 257 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 436
+++++P A + + A QD+ GDGTTSV ++ ELLK A+ ++ +HP+ I G+ LA
Sbjct: 65 MQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLA 124
Query: 437 CKEAVKYI 460
EA+ ++
Sbjct: 125 KNEALTFL 132
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 126 NVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
N+ +++KS+LGP G KMLVD G + +T DG +L
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLL 62
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 266 EHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKE 445
E+ A+++ ++A +E GDGTT+ ++ + V +P + G +LA
Sbjct: 98 ENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDN 157
Query: 446 AVKYIQDN 469
V+++Q N
Sbjct: 158 VVEFLQAN 165
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 159 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
V +LGP G + ++ G +T DG T+ +
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVAR 89
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 335 TSVVIIAAELLKNADELVKTKIHPTSIISGY 427
T++++++ LL E + TK+HP+ +S Y
Sbjct: 302 TNLIVVSVALLHQWAEELSTKVHPSKKLSVY 332
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 26.6 bits (56), Expect = 3.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 166 APLGQLVWIRCWLTILGM 219
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.6 bits (56), Expect = 3.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 166 APLGQLVWIRCWLTILGM 219
+PL +++W+ CW +LG+
Sbjct: 149 SPLSKMMWVFCWRWLLGV 166
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 169 PLGQLVWIRCWLTILGM 219
PLG+++WI W +LG+
Sbjct: 145 PLGKMMWIFAWRWLLGL 161
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 299 AQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNLT 475
A L DE G V+++A + K LV I+P ++ A +K DN+T
Sbjct: 192 ASLLDEGTAAGEAMVMLMANDKKKRKTFLVDKNIYPNTLSVLRTRASGFGIKIELDNIT 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,781
Number of Sequences: 5004
Number of extensions: 50182
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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