Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30371.Seq
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   87   1e-17
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  78   7e-15
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      70   2e-12
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              49   3e-06
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              46   3e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            36   0.026
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)                   29   3.0  
SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)                 29   4.0  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   5.2  
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_51058| Best HMM Match : EGF (HMM E-Value=0.11)                      29   5.2  
SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)                     28   6.9  
SB_52330| Best HMM Match : MCM (HMM E-Value=0)                         28   6.9  
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                28   6.9  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_26644| Best HMM Match : Collagen (HMM E-Value=0)                    28   9.1  

>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 37/72 (51%), Positives = 59/72 (81%)
 Frame = +2

Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
           +K + +++PAAK+LVEL+++QD+EVGDGTTSV ++ +ELLK A++LV  KIHP +I++G+
Sbjct: 68  LKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGW 127

Query: 428 RLACKEAVKYIQ 463
           R + K A K ++
Sbjct: 128 RKSVKAAEKALE 139



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
 Frame = +3

Query: 153 NIVKSSLGPVGLDKMLVD--DIGDVTVTNDGATILK 254
           ++VKS+LGP G+DK+L      G++ VTNDGATILK
Sbjct: 34  DLVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILK 69


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/75 (42%), Positives = 56/75 (74%)
 Frame = +2

Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
           ++ ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ Y
Sbjct: 9   LREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAY 68

Query: 428 RLACKEAVKYIQDNL 472
           RLA  + +  ++  +
Sbjct: 69  RLAMDDMIDILKQQI 83


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/72 (44%), Positives = 54/72 (75%)
 Frame = +2

Query: 257 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 436
           ++V+HPAAK ++E+++ QDEEVGDGTTSV+I+A E +  A+  ++ ++HPT II+ YRLA
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268

Query: 437 CKEAVKYIQDNL 472
             + +  ++  +
Sbjct: 269 MDDMIDILKQQI 280


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
 Frame = +2

Query: 254 MLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRL 433
           M+EV+H  AK++VEL++ QD E+GDGTT VV++A  LL++A++L+   IHP  I  GY L
Sbjct: 78  MMEVDHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYEL 137

Query: 434 ACKEAVKY---IQDNLTV 478
           A K A+++   I DN  V
Sbjct: 138 AAKIALEHMDSIADNFPV 155



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +3

Query: 117 RTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
           +  +++      +I+K+SLGP G+DKM+V   G+VTVTNDGATIL
Sbjct: 32  KQSHILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATIL 76


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/56 (53%), Positives = 46/56 (82%)
 Frame = +2

Query: 296 LAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQ 463
           L+++QD+EVGDGTTSV ++A+ELLK A++LV  KIHP +I++G+R + K A K ++
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE 57


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/75 (36%), Positives = 48/75 (64%)
 Frame = +2

Query: 242 HNIKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 421
           + ++  +++HP A ++  +A  QD+  GDGTTS V+I  ELLK AD  V   +HP  +  
Sbjct: 164 NGVQNSQIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTE 223

Query: 422 GYRLACKEAVKYIQD 466
           G+ +A K+A++ +++
Sbjct: 224 GFEVAKKKALEVLEE 238


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +3

Query: 114 VRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATI 248
           +R  N+       + +++SLGP G+DKM+    GDVT+TNDGATI
Sbjct: 25  IRMTNITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDGATI 69


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +3

Query: 99  SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
           S G P    N+       + V+++LGP G+DK++VD  G  T++NDGATI+
Sbjct: 651 SQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATII 701



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = +2

Query: 248 IKMLEVEHPAAKVLVELAQLQDEE 319
           I +L++ HPAAK LV++A+ QD E
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQDAE 724


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 156 IVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
           I+K S GP GLD ML    G++ +TN G+ IL+
Sbjct: 15  ILKKSFGPNGLDVMLRSSSGNILITNSGSMILE 47


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 359 ELLKNADELVKTKIHPTSIISGYRLACKEAVKYIQDNL 472
           E +  A+  ++ ++HPT II+ YRLA  + +  ++  +
Sbjct: 3   EFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
          Length = 300

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
 Frame = -2

Query: 236 IVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWVSA----GSCPC 87
           +     +PN +   +  T  PKG   Y C  +C +   C H  +     G+C C
Sbjct: 70  VTQGTTVPNAIEGEICNTRCPKGYYGYGCSKKCSN---CQHGATCDPVNGTCSC 120


>SB_6909| Best HMM Match : UPAR_LY6 (HMM E-Value=0.017)
          Length = 472

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 245 CGTIVSDCNIPNIVNQHLIQTNWPKGALYYVCYSRCCHYILCSHWV 108
           C  + +DCN        L      +G     CY  CC   LC+++V
Sbjct: 388 CSVVSADCNENGTRCDRLTSVLKDRGLTLKNCYVNCCQGDLCNNFV 433


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 161 YYVCYSRCCHYILCSHWVSAGSCPCYXQRCSYSRHFLLYF*H 36
           YY CY  C +Y  C ++     C CY   C Y  +   Y+ H
Sbjct: 477 YYYCYCYCYYY--CYYY-----CYCYCYYCCYYCYCYYYYHH 511


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 624  LGFIGXELPXQHLQPSPRRNPASAPISLDXMGCFGLC 514
            +G  G     + +QP P++  A  P  ++  GC GLC
Sbjct: 1654 VGQSGKIFDVKAVQPCPKKASAKYPCEVNNGGCMGLC 1690


>SB_51058| Best HMM Match : EGF (HMM E-Value=0.11)
          Length = 148

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 624 LGFIGXELPXQHLQPSPRRNPASAPISLDXMGCFGLC 514
           +G  G     + +QP P++  A  P  ++  GC GLC
Sbjct: 84  VGQSGKIFDVKAVQPCPKKASAKYPCEVNNGGCMGLC 120


>SB_25900| Best HMM Match : fn3 (HMM E-Value=2e-17)
          Length = 197

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 311 DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACKEAVKYI 460
           DE+V DG     I+AAE + +    +     PTS+ +GY +A    V+ I
Sbjct: 98  DEDVPDGAP---IVAAEAVNSTSLRINCTTLPTSVANGYVIAFNVYVESI 144


>SB_52330| Best HMM Match : MCM (HMM E-Value=0)
          Length = 368

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 192 KMLVDDIGDVTVTNDGATI-LKCWKXS 269
           KMLVD + D  + NDG  + LK WK S
Sbjct: 316 KMLVDKVLDRLIHNDGVILELKSWKES 342


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 278 AKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIIS 421
           A+++ ++A   +EE GDGTT+  ++A  +       V    +P  + S
Sbjct: 127 ARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSS 174


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 407 TSIISGYRLACKEAVKYIQDNLTVTVESLGRAVSIQHRPKQP-MXSKLIGADAGFLLGDG 583
           T + S  R    ++   +  N  V  E++ R  + Q + K   +  +LI  D GFL+G+ 
Sbjct: 425 TFLDSVVRTILPDSSSVLDCNHLVLTENITRFATWQSKEKSDELGEQLIMGDQGFLMGNQ 484

Query: 584 CRC 592
            RC
Sbjct: 485 TRC 487


>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 877

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 599 GNSXPMNPRGNTXIPYPXXLNTSXKPTG-RSCQGK 700
           GN  P  P G   IP P   N    PTG R   GK
Sbjct: 766 GNPGPQGPTGTRGIPGPQGKNGKMGPTGPRGPSGK 800


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,074,704
Number of Sequences: 59808
Number of extensions: 413486
Number of successful extensions: 790
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)