Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30371.Seq
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 141 5e-34
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 90 2e-18
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 81 8e-16
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 79 3e-15
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 74 1e-13
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 69 3e-12
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 69 4e-12
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 67 1e-11
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 57 1e-08
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 56 2e-08
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 43 2e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 36 0.028
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 34 0.086
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 33 0.20
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 33 0.26
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 33 0.26
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 30 1.4
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 28 7.5
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 9.9
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 27 9.9
At1g04310.1 68414.m00422 ethylene receptor-related similar to et... 27 9.9
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 141 bits (341), Expect = 5e-34
Identities = 71/107 (66%), Positives = 86/107 (80%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
++MLEVEHPAAKVLVELA+LQD EVGDGTTSVVI+AAELLK A++LV+ KIHPTSIISGY
Sbjct: 65 LRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGY 124
Query: 428 RLACKEAVKYIQDNLTVTVESLGRAVSIQHRPKQPMXSKLIGADAGF 568
RLA +E+ KYI++ L VE LG+ V + + K M SKLI D+ F
Sbjct: 125 RLAMRESCKYIEEKLVTKVEKLGK-VPLINCAKTSMSSKLISGDSDF 170
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = +3
Query: 57 MSTIAAPLSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTND 236
MS A ++G R G VRTQNVM NIVK+SLGPVGLDKMLVDDIGDVT+TND
Sbjct: 1 MSISAQNPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
Query: 237 GATILK 254
GATIL+
Sbjct: 61 GATILR 66
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/63 (60%), Positives = 57/63 (90%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K L +++PAAKVLV+++++QD+EVGDGTTSVV++A ELL+ A++LV +KIHP +II+GY
Sbjct: 66 LKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGY 125
Query: 428 RLA 436
R+A
Sbjct: 126 RMA 128
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +3
Query: 105 GDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIG---DVTVTNDGATILK 254
G+ R + + ++VKS+LGP G+DK+L G VTVTNDGATILK
Sbjct: 16 GERARMASFVGAMAISDLVKSTLGPKGMDKIL-QSTGRGHAVTVTNDGATILK 67
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 81.0 bits (191), Expect = 8e-16
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 5/112 (4%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K+L++ HPAAK+LV++A+ QD EVGDGTT+VV++AAE LK A ++ +H ++I Y
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 428 RLACKEAVKYIQDNLTVTVESLGRAVS-----IQHRPKQPMXSKLIGADAGF 568
R A A+ +++ L V++E G++V + + SKLIG + F
Sbjct: 129 RTASTLAIAKVKE-LAVSIE--GKSVEEKKGLLAKCAATTLSSKLIGGEKEF 177
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +3
Query: 99 SCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
S G N+ ++V+++LGP G+DK++ DD G VT++NDGATI+K
Sbjct: 19 SQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMK 70
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 79.0 bits (186), Expect = 3e-15
Identities = 45/129 (34%), Positives = 71/129 (55%), Gaps = 5/129 (3%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ LE++HPAAK+LV A+ Q EE+GDG + A ELL+NA+EL++ +HP+ IISGY
Sbjct: 73 VNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGY 132
Query: 428 RLACKEAVKYIQDNLTVTVESLG--RAVSIQHRPKQPMXSKLIGADAGF--LLGDGC-RC 592
A +AV+ ++ + E++ + R + + SK G + L+ D C +
Sbjct: 133 TKAVSKAVEILEQLVETGSETMDVRNKDEVISRMRAAVASKQFGQEEIICSLVTDACIQV 192
Query: 593 CXGNSXPMN 619
C N N
Sbjct: 193 CPKNPTNFN 201
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 108 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 251
D +N+ I ++SLGP G++KM+++ + + VTND ATI+
Sbjct: 26 DEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 73
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/80 (40%), Positives = 56/80 (70%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
++ L+V HPAAK ++EL++ QDEEVGDGTTSV+++A E+L A+ ++ HPT I Y
Sbjct: 65 LRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAY 124
Query: 428 RLACKEAVKYIQDNLTVTVE 487
A ++++ + D + ++++
Sbjct: 125 IKALEDSIA-VLDKIAMSID 143
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 78 LSVAGTRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
LS + R G V N+ +I++++LGP + KML+D G + VTNDG IL+
Sbjct: 8 LSDSLKRESGSKVHHGNIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILR 66
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/84 (45%), Positives = 49/84 (58%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+ +EV PAAK+LVEL++ QD GDGTT+VV+IA LLK L+ IHPT I
Sbjct: 74 LNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSL 133
Query: 428 RLACKEAVKYIQDNLTVTVESLGR 499
AC +A+ I + V VE R
Sbjct: 134 HKACGKAID-ILTAMAVPVELTDR 156
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/58 (41%), Positives = 35/58 (60%)
Frame = +3
Query: 108 DPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILKCWKXSILLP 281
+ +R N+ + V++SLGP G+DKM+ G+V +TNDGATIL K +L P
Sbjct: 27 EDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILN--KMEVLQP 82
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/72 (40%), Positives = 51/72 (70%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
++ ++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY
Sbjct: 74 LEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGY 133
Query: 428 RLACKEAVKYIQ 463
+A + AV++++
Sbjct: 134 EMASRVAVEHLE 145
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/54 (48%), Positives = 34/54 (62%)
Frame = +3
Query: 93 TRSCGDPVRTQNVMXXXXXXNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
TR G + N+ I++SSLGP G+DKML GD+T+TNDGATIL+
Sbjct: 22 TRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILE 75
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = +2
Query: 257 LEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLA 436
++V++ AK++VEL++ QD E+GDGTT VV++A LL+ A+ + IHP I GY +A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 437 CKEAVKYIQ 463
+ AV++++
Sbjct: 61 SRVAVEHLE 69
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/79 (30%), Positives = 47/79 (59%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 428 RLACKEAVKYIQDNLTVTV 484
+A + ++++ DN V
Sbjct: 123 EIAKRATLQFL-DNFKTPV 140
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 153 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
+++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGY 427
+K +++++P A ++ A QD+ GDGTTS VI EL+K ++ + +HP ++ G+
Sbjct: 63 LKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF 122
Query: 428 RLACKEAVKYIQDNLTVTV 484
+A + ++++ T V
Sbjct: 123 EIAKRATLQFLDTFKTPVV 141
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 153 NIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
+++KS+LGP G KMLV GD+ +T DG T+LK
Sbjct: 31 DVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLK 64
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
+E+ A ++ E+A +E GDGTT+ +I+A E++K + + S+ +G K
Sbjct: 97 IENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVK 156
Query: 443 EAVKYIQ 463
E V+ +Q
Sbjct: 157 ELVRVLQ 163
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
+E+ A ++ E+A ++ GDGTT+ I+A E++K+ V + +P S+ G +
Sbjct: 110 MENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQ 169
Query: 443 EAVKYIQ 463
++ +Q
Sbjct: 170 GLIEELQ 176
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 34.3 bits (75), Expect = 0.086
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
VE+ AK++ + A ++ GDGTT+ V++A L+ ++V +P I G K
Sbjct: 117 VENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK 176
Query: 443 EAV 451
V
Sbjct: 177 ALV 179
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 117 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 176
Query: 443 EAVKYIQ 463
V ++
Sbjct: 177 ALVNELK 183
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 443 EAV 451
V
Sbjct: 181 ALV 183
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
VE+ AK++ + A ++ GDGTT+ V++A + ++V +P I G K
Sbjct: 121 VENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK 180
Query: 443 EAV 451
V
Sbjct: 181 ALV 183
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 248 IKMLEVEHPAAKVLVELAQLQ----DEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSI 415
+K +E+E P V V+L + ++ GDG+T+ +I+A L+ +++ +P +
Sbjct: 96 LKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQV 155
Query: 416 ISGYRLACKEAV 451
G K V
Sbjct: 156 ARGIEKTTKALV 167
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 168 SLGPVGLDKMLVDDIGDVTVTNDGATILK 254
+LGP G + +L + G + NDG T+LK
Sbjct: 69 TLGPKGRNVVLQNKYGPPRIVNDGETVLK 97
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/67 (19%), Positives = 31/67 (46%)
Frame = +2
Query: 263 VEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTSIISGYRLACK 442
+++ A ++ ++A ++ GDGTT ++ + + V ++ + G +LA
Sbjct: 97 IKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVD 156
Query: 443 EAVKYIQ 463
V +Q
Sbjct: 157 TVVTNLQ 163
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 59 VDYSCTFVXSRDKILRRPSENTKCNGSSGY 148
+D S F + LRRPS NT C GY
Sbjct: 162 IDTSLVFKYPNSRKLRRPSLNTLCMSVLGY 191
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 159 VKSSLGPVGLDKMLVDDIGDVTVTNDGATILK 254
VK ++GP G + ++ G +T DG T+ K
Sbjct: 57 VKVTMGPKGRNVIIESSYGGPKITKDGVTVAK 88
>At1g04310.1 68414.m00422 ethylene receptor-related similar to
ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
contains Pfam profiles PF01590: GAF domain, PF00512: His
Kinase A (phosphoacceptor) domain
Length = 645
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 434 ACKEAVKYIQDNLTVTVESLGRAVSI 511
AC+ VKY+Q N+ V + LG S+
Sbjct: 586 ACQNIVKYMQGNIRVVEDGLGLVKSV 611
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,535,588
Number of Sequences: 28952
Number of extensions: 273600
Number of successful extensions: 545
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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