Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30370.Seq
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar...    30   1.4  
At5g61160.1 68418.m07673 transferase family protein similar to a...    28   7.5  
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical...    28   7.5  
At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical...    28   7.5  
At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical...    28   7.5  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    27   9.9  
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro...    27   9.9  

>At1g05850.1 68414.m00612 chitinase-like protein 1 (CTL1) similar to
           class I chitinase GI:7798656 from [Halimolobos perplexa
           var. perplexa]; contains Pfam profile PF00182: Chitinase
           class I; identical to cDNA chitinase-like protein 1
           (CTL1) CTL1-ELP1 allele GI:17226328
          Length = 321

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 145 GNDVSFQGWDAFWWTSVAC 89
           GN V  QGW+  WW+   C
Sbjct: 38  GNKVCTQGWECSWWSKYCC 56


>At5g61160.1 68418.m07673 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 452

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +3

Query: 291 SKNSSTRDLPLAGFHGEVLPGGQRSLFILFTHF 389
           +++SS+RD+    F+  +LP  +RSL ++ THF
Sbjct: 47  TESSSSRDV----FYSSILPKLERSLSLILTHF 75


>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 612

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 550 FRDWELGPGXMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
           FR   +    MS   PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 493 FRKLHVESQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 540


>At2g44590.2 68415.m05550 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 595

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 550 FRDWELGPGXMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
           FR   +    MS   PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 476 FRKLHVESQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523


>At2g44590.1 68415.m05549 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 596

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = -3

Query: 550 FRDWELGPGXMSRRPPTTNFDQEYQG*SRNTKRRVAAQIKRLAPILTN 407
           FR   +    MS   PT+  DQ   G  R     VAA IK +A  L N
Sbjct: 476 FRKLHVESQNMSLSSPTSAIDQYGDGHFRKIASNVAAYIKMVAETLVN 523


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  NFNTLNQYGRSKSASRRHWSTKRHPSLE 129
           +F +  Q G   S+S++HW  +R P  E
Sbjct: 401 HFASWRQLGHLLSSSKKHWGMRRQPKSE 428


>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family
           protein similar to carbamoylphosphate synthetase
           GI:6552726 from [Medicago sativa]; contains Pfam
           profiles PF02786: Carbamoyl-phosphate synthase L chain
           ATP binding domain, PF00289: Carbamoyl-phosphate
           synthase L chain N-terminal domain, PF02787:
           Carbamoyl-phosphate synthetase large chain
           oligomerisation domain
          Length = 1187

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 695 AXTXTLPTXPKLVGIRTDLIQAALTGTMP 609
           A T T P  P++VG RTDL +  + G  P
Sbjct: 80  ADTTTKPFSPEIVGKRTDLKKIMILGAGP 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,969
Number of Sequences: 28952
Number of extensions: 349530
Number of successful extensions: 1017
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)