Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30366.Seq
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    38   1e-04
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    36   5e-04

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
 Frame = -1

Query: 415 PSRLMLPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGY 275
           P  ++LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GY
Sbjct: 582 PQHMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGY 641

Query: 274 PFDR 263
           PFDR
Sbjct: 642 PFDR 645



 Score = 31.5 bits (68), Expect = 0.009
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 657 RCSLDLKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTD 517
           R  L  ++DE G P+   +    F ELD F   +  G + ITR ST+
Sbjct: 500 RIFLAPQFDERGNPWLFRNQKDMFIELDRFAVSLKQGTNTITRHSTE 546


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -2

Query: 657 RCSLDLKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSST 520
           R  L  K DE G P+   D  + F ELD F   +  GQ+ ITR+S+
Sbjct: 501 RIFLAPKTDERGNPWLFRDQKIMFIELDKFTVNLKQGQNTITRASS 546



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 13/64 (20%)
 Frame = -1

Query: 415 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGY 275
           P  +++PKGT +G   QLFV +  Y+    +                   + PD +  GY
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGY 642

Query: 274 PFDR 263
           PFDR
Sbjct: 643 PFDR 646


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,141
Number of Sequences: 336
Number of extensions: 3452
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)