Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30366.Seq
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.16 
03_05_0977 + 29355824-29357056                                         31   1.5  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    30   2.6  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   6.1  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   6.1  
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856     29   6.1  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 461
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>03_05_0977 + 29355824-29357056
          Length = 410

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 213 DLLEEHVRLFEVLRRTGRSNG*PNG-LLSGTTDLNGSDSLGVGSYG*TNTN 362
           D+L   ++LF  L      N  PNG L S +TD   + S+  G  G T TN
Sbjct: 330 DVLNNQIKLFIDLTSAAELNYRPNGTLASASTDAENATSVDRGHDGNTGTN 380


>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
            8812361-8812492,8812681-8812864,8813002-8813135,
            8813552-8813656,8813738-8813839,8813930-8814022,
            8814136-8814456,8814595-8814696,8814791-8814853,
            8815213-8815708,8815964-8816124,8816213-8816743,
            8817077-8817118,8817203-8817334,8817639-8817703,
            8817858-8818169,8818262-8818334,8818425-8818517,
            8819440-8819501,8819740-8819809
          Length = 1777

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 780  SKGGTQGSPHGLQGPSXS 727
            S GGT+ SPHGL  PS S
Sbjct: 1661 SPGGTEASPHGLPSPSDS 1678


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 361 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 263
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 472
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 360 NSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPWSKSL*ISAIGKESSLKMQS 518
           NS +GNPS  P G  +L   V +  +++ G  P S S  + + G  S +++ S
Sbjct: 658 NSIQGNPSLQPCGLSTLANTVMKARSLAEGDVPPSDSATVDSGGGFSKIEIAS 710


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,709
Number of Sequences: 37544
Number of extensions: 346853
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)