Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30366.Seq
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
 Frame = -2

Query: 672 LTPSSRCSLDLKYDENGFPFSLEDNWMNFYELDWFVQKV-----NPGQSQITRSSTDFAF 508
           LTP S  SL      N     +ED     YE DW+V KV       G++ +T  S     
Sbjct: 588 LTPPSALSL-----RNELALKVEDFVAAAYEGDWYVGKVQQIDQEDGEALVTFMSRSGTT 642

Query: 507 SKKTLYRWP-KSTSSWTKERFLLTCSTP 427
            +   +RWP +    W K   +L    P
Sbjct: 643 LQSFSFRWPAREDVIWIKRDMILCVIEP 670


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 415 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 272
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,423,445
Number of Sequences: 59808
Number of extensions: 415123
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)