Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30366.Seq
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   1.3  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.8  
At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containi...    28   6.7  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   8.9  
At1g48090.2 68414.m05363 C2 domain-containing protein contains P...    28   8.9  
At1g48090.1 68414.m05362 C2 domain-containing protein contains P...    28   8.9  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 437
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 300  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 446
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At5g13770.1 68418.m01606 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 609

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 663 SSRCSLDLKYDENGFPFSLEDNWMNF 586
           SSRCS+ L+ DE   P   ED W  F
Sbjct: 42  SSRCSMVLEEDEKKSPSPKEDKWPFF 67


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 321 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 437
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 3427

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 648 LDLKYDENGFPFSLEDNWMNFYELDW 571
           L L +D N FP+ +E  W N    +W
Sbjct: 263 LALYHDSNSFPWEIEKQWDNITPEEW 288


>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
           profile: PF00168 C2 domain
          Length = 4144

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 648 LDLKYDENGFPFSLEDNWMNFYELDW 571
           L L +D N FP+ +E  W N    +W
Sbjct: 263 LALYHDSNSFPWEIEKQWDNITPEEW 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,002,946
Number of Sequences: 28952
Number of extensions: 295339
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)