Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30365.Seq
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   103   2e-23
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   103   2e-23
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   3.8  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  103 bits (247), Expect = 2e-23
 Identities = 48/73 (65%), Positives = 55/73 (75%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
           MVR  VL   L +I NAE+RG+RQ  I P SKV VKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 292 IVVNLTGRLNKCG 254
           IV+ L GR+NKCG
Sbjct: 61  IVIQLNGRINKCG 73



 Score = 64.5 bits (150), Expect = 9e-12
 Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = -2

Query: 254 VISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMXHEEAR 126
           VISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  103 bits (247), Expect = 2e-23
 Identities = 48/73 (65%), Positives = 55/73 (75%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
           MVR  VL   L +I NAE+RG+RQ  I P SKV VKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 292 IVVNLTGRLNKCG 254
           IV+ L GR+NKCG
Sbjct: 61  IVIQLNGRINKCG 73



 Score = 64.5 bits (150), Expect = 9e-12
 Identities = 31/44 (70%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = -2

Query: 254 VISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMXHEEAR 126
           VISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEAR 117


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 286 VNLTGRLNKCGSFHLVLMFPSTILKDGLICS 194
           V+L  +      F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,823
Number of Sequences: 5004
Number of extensions: 26378
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)