Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30365.Seq
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          116   1e-26
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   116   1e-26
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           71   7e-13
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    33   0.13 
03_06_0497 - 34332310-34334415                                         28   5.1  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  116 bits (278), Expect = 1e-26
 Identities = 54/73 (73%), Positives = 60/73 (82%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
           MVR+ VL  ALK+++NAEKRGKRQ  I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 292 IVVNLTGRLNKCG 254
           IVV L GRLNKCG
Sbjct: 61  IVVELNGRLNKCG 73



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 35/45 (77%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
 Frame = -2

Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
           VISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIM HEEARR
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  116 bits (278), Expect = 1e-26
 Identities = 54/73 (73%), Positives = 60/73 (82%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
           MVR+ VL  ALK+++NAEKRGKRQ  I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 292 IVVNLTGRLNKCG 254
           IVV L GRLNKCG
Sbjct: 61  IVVELNGRLNKCG 73



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 35/45 (77%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
 Frame = -2

Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
           VISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIM HEEARR
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = -3

Query: 457 VLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 278
           +L  AL+++ NAE+RGK    + P S V V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 277 TGRLNKC 257
            GR+  C
Sbjct: 65  HGRIKDC 71



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
 Frame = -2

Query: 278 HRQTKQVWVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEA 129
           H + K    ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++ HEEA
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEA 115


>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
            2863431-2863516,2863648-2866272
          Length = 1139

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -3

Query: 316  VDDHRAGKIVVNLTGRLNKCGSFHLVLMFPSTILKDGLICSPHDSLVT 173
            VDDH++G+I++   GRLNK G    V+ F S +    L   P  S  T
Sbjct: 912  VDDHKSGEIILEFDGRLNKWG----VISFRSDVKVKKLSPGPQVSFPT 955


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -3

Query: 331 GEFEIVDDH-RAGKIVVNLTGRLNKCGSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 155
           G  E+V +H +AG+I      R+  C    L       +LK GL+CS  D     S++QV
Sbjct: 575 GLVELVLEHWKAGEITAARDPRIGDCDEDDL-----EVVLKLGLLCSHPDPRRRPSMRQV 629

Query: 154 VASWXMKKPEENXLEEKF*ASFSKF 80
           V       P    L E       +F
Sbjct: 630 VQILEGAAPAPETLPEDLECGVGQF 654


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,115,426
Number of Sequences: 37544
Number of extensions: 172629
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)