Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30365.Seq
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             63   1e-10
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   7e-05
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)                     27   6.9  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 33/44 (75%), Positives = 34/44 (77%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKH 341
           MVR+ VL  AL SI NAEKRGKRQ  I P SKV VKFLTVMMKH
Sbjct: 1   MVRVNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH 44


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 44.0 bits (99), Expect = 7e-05
 Identities = 20/26 (76%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
 Frame = -2

Query: 254 VISPRFDVPINDIERW-TNLLPSRQF 180
           VISPRFDV + DIE+W +NLLPSRQF
Sbjct: 3   VISPRFDVGVRDIEQWASNLLPSRQF 28


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 439 KSIHNAEKRGKRQXXIXPCSKVXVKFL--TVMMKHGYIGEFEIV 314
           K+IHN   RGKR   +     V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
          Length = 549

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = -2

Query: 251 ISPRFDVPINDIERWTNLLPSRQ---FGYLVLTTSGGIMXHEE 132
           ISP F VP  D ++ ++L+PS+Q    G+L+ + S  +   EE
Sbjct: 381 ISPIFTVPKKDGKKKSSLIPSQQITFLGFLIDSMSTTVRLTEE 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,490
Number of Sequences: 59808
Number of extensions: 195246
Number of successful extensions: 341
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)