Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30365.Seq
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a ... 134 2e-31
BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a ... 134 2e-31
BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a ... 134 2e-31
BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a ... 134 2e-31
BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a ... 134 2e-31
AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein. 134 2e-31
AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein. 134 2e-31
X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a pr... 132 5e-31
X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homolog... 107 2e-23
BC071775-1|AAH71775.1| 37|Homo sapiens Unknown (protein for MG... 32 1.4
>BC105292-1|AAI05293.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC105273-1|AAI05274.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC046113-1|AAH46113.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC030569-1|AAH30569.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>BC001697-1|AAH01697.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 71.7 bits (168), Expect = 1e-12
Identities = 33/45 (73%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPR DV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRSDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>AY208299-1|AAO48936.1| 130|Homo sapiens S15a protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>AB062400-1|BAB93487.1| 130|Homo sapiens OK/SW-cl.82 protein.
Length = 130
Score = 134 bits (323), Expect = 2e-31
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>X84407-1|CAA59127.1| 130|Homo sapiens ribosomal protein S15a
protein.
Length = 130
Score = 132 bits (320), Expect = 5e-31
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKRQ I PCSKV V+FLT+MMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTLMMKHGYIGEFEIIDDHRAGK 60
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 61 IVVNLTGRLNKCG 73
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 118
>X62691-1|CAA44568.1| 129|Homo sapiens ribosomal protein homologous
to yeast S24 protein.
Length = 129
Score = 107 bits (257), Expect = 2e-23
Identities = 54/73 (73%), Positives = 58/73 (79%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVRM VL ALKSI+NAEKRGKR+ + LTVMMKHGYIGEFEI+DDHRAGK
Sbjct: 1 MVRMNVLADALKSINNAEKRGKRRCLLGRLQSHR-PVLTVMMKHGYIGEFEIIDDHRAGK 59
Query: 292 IVVNLTGRLNKCG 254
IVVNLTGRLNKCG
Sbjct: 60 IVVNLTGRLNKCG 72
Score = 74.9 bits (176), Expect = 1e-13
Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + D+E+W NLLPSRQFG++VLTTS GIM HEEARR
Sbjct: 73 VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARR 117
>BC071775-1|AAH71775.1| 37|Homo sapiens Unknown (protein for
MGC:88417) protein.
Length = 37
Score = 31.9 bits (69), Expect = 1.4
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKF 362
MV M VL ALKSI+N + RGK Q C + F
Sbjct: 1 MVHMNVLTIALKSINNVKTRGKHQVLRRLCPVLLSSF 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,860,482
Number of Sequences: 237096
Number of extensions: 925850
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -