Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30365.Seq
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   121   3e-28
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  121 bits (292), Expect = 3e-28
 Identities = 59/71 (83%), Positives = 62/71 (87%)
 Frame = -3

Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
           MVRM VL  AL +I+NAEKRGKRQ  I P SKV V+FLTVMMKHGYIGEFEIVDDHRAGK
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGK 60

Query: 292 IVVNLTGRLNK 260
           IVVNLTGRLNK
Sbjct: 61  IVVNLTGRLNK 71



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/45 (73%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
 Frame = -2

Query: 254 VISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMXHEEARR 123
           VISPR ++ +ND+E++TN LLPSRQFGYL+LTTS GIM HEEARR
Sbjct: 74  VISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARR 118


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = -1

Query: 189 TTVWL-PSPYNKWW 151
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,582,416
Number of Sequences: 27780
Number of extensions: 146456
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)