Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30365.Seq
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 116 7e-27
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 116 7e-27
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 116 7e-27
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 115 2e-26
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 109 1e-24
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 70 8e-13
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 70 1e-12
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 116 bits (280), Expect = 7e-27
Identities = 55/73 (75%), Positives = 60/73 (82%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVR+ VL ALKS++NAEKRGKRQ I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 292 IVVNLTGRLNKCG 254
IVV L GRLNKCG
Sbjct: 61 IVVELNGRLNKCG 73
Score = 73.7 bits (173), Expect = 7e-14
Identities = 35/45 (77%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 116 bits (280), Expect = 7e-27
Identities = 55/73 (75%), Positives = 60/73 (82%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVR+ VL ALKS++NAEKRGKRQ I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 292 IVVNLTGRLNKCG 254
IVV L GRLNKCG
Sbjct: 61 IVVELNGRLNKCG 73
Score = 73.7 bits (173), Expect = 7e-14
Identities = 35/45 (77%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 116 bits (280), Expect = 7e-27
Identities = 55/73 (75%), Positives = 60/73 (82%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVR+ VL ALKS++NAEKRGKRQ I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 292 IVVNLTGRLNKCG 254
IVV L GRLNKCG
Sbjct: 61 IVVELNGRLNKCG 73
Score = 73.7 bits (173), Expect = 7e-14
Identities = 35/45 (77%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + +IE WT LLPSRQFGY+VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARR 118
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 115 bits (276), Expect = 2e-26
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVR+ VL LKS++NAEKRGKRQ I P SKV +KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60
Query: 292 IVVNLTGRLNKCG 254
IVV L GRLNKCG
Sbjct: 61 IVVELNGRLNKCG 73
Score = 72.1 bits (169), Expect = 2e-13
Identities = 34/45 (75%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPRFDV + +IE WT LLPSRQFG++VLTTS GIM HEEARR
Sbjct: 74 VISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARR 118
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 109 bits (262), Expect = 1e-24
Identities = 52/73 (71%), Positives = 56/73 (76%)
Frame = -3
Query: 472 MVRMXVLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGK 293
MVR VL LKS+ NAEK+GKRQ I P SKV +KFLTVM KHGYI EFE VDDHR+GK
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66
Query: 292 IVVNLTGRLNKCG 254
IVV L GRLN CG
Sbjct: 67 IVVELNGRLNNCG 79
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/45 (71%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Frame = -2
Query: 254 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMXHEEARR 123
VISPR+D+ + +IE WT LLPSRQFGY+VLTTS GIM HEEAR+
Sbjct: 80 VISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARK 124
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 70.1 bits (164), Expect = 8e-13
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = -3
Query: 457 VLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 278
+L AL++I NAEKRGK + P S V FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64
Query: 277 TGRLNKC 257
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = -2
Query: 242 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMXHEEA 129
R DV N+I ++T LP+RQ+GY+V+TT GI+ HEEA
Sbjct: 77 RQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEA 115
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/67 (46%), Positives = 43/67 (64%)
Frame = -3
Query: 457 VLXXALKSIHNAEKRGKRQXXIXPCSKVXVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 278
+L AL++I NAE+RGK + P S V FL +M + GYI F++ D HR G+I V+L
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64
Query: 277 TGRLNKC 257
GR+N C
Sbjct: 65 QGRVNDC 71
Score = 44.8 bits (101), Expect = 3e-05
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = -2
Query: 242 RFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMXHEEA 129
R DV +IE++T LP+RQ+GY+V+TT GI+ HEEA
Sbjct: 77 RQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEA 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,191,579
Number of Sequences: 28952
Number of extensions: 141236
Number of successful extensions: 239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -