Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30364.Seq
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    26   0.39 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.51 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.7  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 514 FFSFWLLLLRFK*YTFLFDNSNKMCFKEYFLYIF 615
           FF+FW +L     +   F+  N+   + Y ++IF
Sbjct: 68  FFNFWTILFSRSDFFQQFECDNEPKLRHYLIFIF 101


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +2

Query: 449 IYILVLKFYYLSF*ILDHEMMFFFLSGFCYLDLNNTLFCSITLIKCASRSIFYIYFP*LL 628
           +++L L ++ L    L    +++F S F    ++   +C + ++ C    I+Y Y+  +L
Sbjct: 194 LFLLCLDYFTLHLLFLP--CIYYFYSAFIIFTIHLLFYCVLIILLC----IYYFYYAFIL 247


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 66  GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
           G K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 472 GEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 520


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 66  GFKMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
           G K     K+P++A++L++   R+K+  +    +   I +  G  W ++
Sbjct: 364 GEKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHAL 412


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 245  KSQKQYIVDLESFNANGGGPV 307
            K+  QY V +++FN  G GP+
Sbjct: 1067 KTYTQYSVVVQAFNKVGAGPL 1087


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,550
Number of Sequences: 336
Number of extensions: 2952
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)