Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30364.Seq
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 73 3e-13
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 49 5e-06
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 46 3e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 42 6e-04
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 0.001
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 41 0.001
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 41 0.001
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 41 0.001
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 40 0.002
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 40 0.002
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 40 0.002
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 38 0.009
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 36 0.028
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 34 0.15
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 33 0.26
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 33 0.26
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 32 0.45
SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87) 32 0.45
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 30 1.8
SB_36680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_45073| Best HMM Match : ERM (HMM E-Value=0) 29 5.5
SB_7203| Best HMM Match : DUF382 (HMM E-Value=5.4) 29 5.5
SB_18060| Best HMM Match : Pepsin-I3 (HMM E-Value=0.67) 28 7.3
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 72.9 bits (171), Expect = 3e-13
Identities = 30/51 (58%), Positives = 40/51 (78%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKS 224
K + PKR MSAY+LWLN R +IKD NPG+ VTE++K AGE+W+++ DKS
Sbjct: 537 KDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKS 587
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 48 IKIHI*GFKMTDKP--KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
+ + + G K T KP KRPM+A+++W +AR K+ D P L E++K G++W+ + D
Sbjct: 50 LPVRVNGIK-TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 46.4 bits (105), Expect = 3e-05
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
D+ KRPM+A+++W R K+ DNP + +EI+K+ G W+ + ++
Sbjct: 787 DRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K + KRPM+A+++W R KI +NP + +EI+K+ G W+ + D
Sbjct: 322 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 46.4 bits (105), Expect = 3e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K + KRPM+A+++W R KI +NP + +EI+K+ G W+ + D
Sbjct: 5 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 45.2 bits (102), Expect = 6e-05
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K K KRPM+++++W SAR K+ + P + E++K G++WR +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
K +KPKR +SAY ++N R +K DNP ++K GE+W M D
Sbjct: 97 KDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTD 145
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
K +KPK SAY +L R K++ + + + +K + E W++M ++
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEE 56
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 44.4 bits (100), Expect = 1e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +3
Query: 78 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
T++ KRPM+A+++W R ++ D NP L E++K G WR++
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 41.9 bits (94), Expect = 6e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
KRPM+++++W R K ++NP L EI+K G+ W + K
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K D KRPM+AY++W R +I ++ P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
D KRP++++++W R + +NP ++ EI+K G+ WR M
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKM 51
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K + PK P++ Y+ +LN R K++ +NP L E+ + G +W +
Sbjct: 172 KDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQL 218
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W + R ++ +NP L ++I+K G WR +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+A+++W + R ++ +NP L ++I+K G WR +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWR 206
KRPM+A+++W R K+ +++P + EI+K+ G+ W+
Sbjct: 46 KRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWK 84
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K+ +P +P+SAY ++ ++ I+ NP + EIAK G++W ++
Sbjct: 920 KIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENL 966
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +3
Query: 78 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
++K KRP++A++LW R I ++NP + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
++PK P+++Y + R+K+ P LK TE+A K + WR M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 96 PMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
P+SA+ LW N AR + NP + ++ KK W+ + +K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.1 bits (87), Expect = 0.004
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
KRPM+ +++W R +I +NPG+ ++K G W+ +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K KRPM+A+++W RS I P EI+ + GEIW +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDL 142
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYD 218
P++P+ Y+ + ++K+ NP K+ +I K G++WR + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 81 DKPKRPMSAYLLW---LNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
+KPK P++ Y+ + LNS R +K +P L EI K G+ W S+
Sbjct: 192 NKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSL 238
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 72 KMTDKPKRPMSAYLLWLNSARSKI--KDDNPGLKVTEIAKKAGEIWRSMYDK 221
K DKPKRP +AY L+L + R ++ K G K+ + AGE WR M D+
Sbjct: 572 KDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSL---AGERWREMSDE 620
Score = 32.7 bits (71), Expect = 0.34
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIK-----DDNPGLKVTEIAKKAGEIWRSMYDK 221
KR SAY+ + + R+K+K P K E+AK AGE W+ + D+
Sbjct: 497 KRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDE 545
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 34.7 bits (76), Expect = 0.084
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
KRPM+A+++W R + P + +EI+K G W++M D+
Sbjct: 10 KRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 34.7 bits (76), Expect = 0.084
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 84 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K KRP A+ + K+K++NP LK EI K + W ++
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANL 347
Score = 31.5 bits (68), Expect = 0.79
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 87 PKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
P++P + L++ +KIK +N G+ +I ++ G WR++
Sbjct: 374 PRKPPRHFSLFMRENFAKIKAENQGMSNPDIMRELGAKWRNL 415
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDK 221
KRPM+A+++W + R K+ P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
D+ + + + LWL R +I+++NP + ++ K A + W+ +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 33.1 bits (72), Expect = 0.26
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 81 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
D+ + + + LWL R +I+++NP + ++ K A + W+ +
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 370
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 209
KR S YLL+ + R I+ ++P EI++ GE WR+
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)
Length = 363
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 298 RSRREKKENPKTREESETGAKNKESETGRRG 390
+SRREK+ NP+ R+++ G + K+S R+G
Sbjct: 284 QSRREKRSNPEERDKAIPGRETKQSRGERQG 314
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 209
KR S YLL+ + R I+ ++P EI++ GE WR+
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 31.9 bits (69), Expect = 0.60
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 289 KWRRSRR-EKKENPKTREESETGAKNKESETGRRG 390
KW R E+++ PKT EE E ++N GRRG
Sbjct: 236 KWLHDRYVEEEQAPKTAEELEESSRNLRRNAGRRG 270
>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 289 KWRRSRREKKENPKTREESETGAKNKESETGRRGR 393
K R+ +++KK+ K EE E +N+E E R+ R
Sbjct: 15 KKRKKKKQKKQKKKKEEEEEEEEENEEEERRRKRR 49
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 295 RRSRREKKENPKTREESETGAKNKESE 375
R+ ++KKE + EE ET A N+E E
Sbjct: 59 RKKEKKKKEEEEEEEEEETEAVNEEEE 85
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 90 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 212
K PM+A+++ R NPG+ +E +K G W+ +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_36680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 208 PCMTKANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTREESETGAKNKES 372
P K K++ Q+PK C RSR++ KE K +E E + KES
Sbjct: 157 PVRQKKKAKRKNQRPKASQC----------RSRKDIKECTKKEDEPEFSVRGKES 201
>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
Length = 504
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 211 CMTKANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTRE-ESETGAKN 363
CM RR+KP TI + + + RREK+ N +E E+ T A+N
Sbjct: 261 CMGNHELYMRRRKPDTIEVQQMKAQAREEKVRREKERNALVKEAEARTKAEN 312
>SB_7203| Best HMM Match : DUF382 (HMM E-Value=5.4)
Length = 253
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +1
Query: 205 GPCMTKANGKKRRQKPKTIHCRFRII*CKWRRSRREKKENPKTREESETGAKN 363
G C TK + K K I R+RII W+ +R K ++ + E+S+ G KN
Sbjct: 2 GKCATKIHFKA-----KGIRTRYRIIEITWQNTREVKSQSHEILEKSK-GNKN 48
>SB_18060| Best HMM Match : Pepsin-I3 (HMM E-Value=0.67)
Length = 328
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 181 PKKQAKSGGPCMTKANGKKRRQKP-KTIHCRFRII*CKWRRSRREKKENPKTREESETGA 357
PKK+ S + + +KRR + + ++ +W R + EKKE + ++E
Sbjct: 257 PKKKKPSNQQILRSSEVRKRRDDELRKLELAKQL---EWDRKQEEKKERKQKKKEERMRK 313
Query: 358 KNKESE 375
K +E E
Sbjct: 314 KEQEKE 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,012,159
Number of Sequences: 59808
Number of extensions: 299125
Number of successful extensions: 1127
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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