Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30364.Seq
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 114 LWLNSARSKIKDDNPGLKV 170
           +W  + R+K K  NPGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 245  KSQKQYIVDLESFNANGGGPV 307
            K+  QY V +++FN  G GP+
Sbjct: 1048 KTYTQYSVVVQAFNKVGSGPM 1068


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 267  TMYCFWLLPPFLPIRF 220
            T + FW  PPF+P  F
Sbjct: 1159 TPFNFWNPPPFMPSPF 1174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,238
Number of Sequences: 438
Number of extensions: 3476
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)