Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30363.Seq
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 92 6e-20
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 92 6e-20
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 34 0.023
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 29 0.50
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.1
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 92.3 bits (219), Expect = 6e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +2
Query: 80 KRAPIRKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
KRA RKKRK+ LGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++K
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75
Score = 79.0 bits (186), Expect = 6e-16
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGI+RD HKR ATG + + ++ + + +PS + + V
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF-------ELGRQPSNTRIGPKRIHEVRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
R L L G F+ +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WY
Sbjct: 54 KFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 504
E+HY + +G KG K T +S+ RK+ AR +KV
Sbjct: 114 ETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKV 152
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYI 596
ALE QF GRL A V+SRPGQ GR DGYI
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYI 183
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 92.3 bits (219), Expect = 6e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +2
Query: 80 KRAPIRKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
KRA RKKRK+ LGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++K
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKK 75
Score = 78.2 bits (184), Expect = 1e-15
Identities = 61/165 (36%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGI+RD HKR ATG + + ++ + + +PS + + V
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF-------ELGRQPSNTRIGPKRIHEVRVRGGNK 53
Query: 211 GHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWY 369
R L L G F+ +TRII V Y+ SNNELVRT TL K+AIV +DA PFR WY
Sbjct: 54 KFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWY 113
Query: 370 ESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKV 504
E+HY + +G KG K T +S+ RK+ AR +KV
Sbjct: 114 ETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKV 152
Score = 45.6 bits (103), Expect = 7e-06
Identities = 21/29 (72%), Positives = 22/29 (75%)
Frame = +3
Query: 510 ALEEQFHTGRLLACVASRPGQCGRADGYI 596
ALE QF GRL A V+SRPGQ GR DGYI
Sbjct: 155 ALETQFAAGRLYAVVSSRPGQSGRCDGYI 183
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 639 T*SXLDXTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLEHL 505
T S D + CLLR H+RD + + RK N L G LLE +
Sbjct: 429 TNSGKDANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLEEM 473
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 59 SEGPPAGKRAPIRKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTKYRALR 208
S+G K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 35 SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 6.1
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Frame = -2
Query: 285 CIIHNINDTGLRVEHSDPQEKLPVS-RRSA---RYL-------VFPPRERTEWIR*GPSL 139
C + ++NDT +E S + LP+ +R A RY+ + P TEW+ S+
Sbjct: 348 CFLIHLNDTNHNLEFSTTSQPLPLEWQRWAVDPRYIKLFGSNAILPNEWVTEWVE--QSI 405
Query: 138 VFAAGRPXSYFLFLRMGARFPAGGPSLMPVIP 43
AAG + RM G PSL +P
Sbjct: 406 SVAAGIVAQMYTSKRMA----LGDPSLFAGLP 433
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 368 YHCLNGVASTTTIAFLTRVFVRTNS 294
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,581
Number of Sequences: 5004
Number of extensions: 49949
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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