Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30363.Seq
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              122   4e-28
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           36   0.033
SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)                  29   4.9  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   4.9  
SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)                28   6.5  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  122 bits (293), Expect = 4e-28
 Identities = 58/84 (69%), Positives = 67/84 (79%)
 Frame = +1

Query: 253 QTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 432
           + RIIDVVYNASNNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+
Sbjct: 59  KARIIDVVYNASNNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQ 118

Query: 433 AIINKKRSQKTARKYLARQRLAKV 504
            I+NKKRS    RK  AR+  AKV
Sbjct: 119 EILNKKRSNHCTRKLEARKANAKV 142



 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = +2

Query: 89  PIRKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 256
           P+R KRK+ LGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRK 59



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +3

Query: 513 LEEQFHTGRLLACVASRPGQCGRADGYI 596
           +EEQF TGRL ACV+SRPGQ GR DGYI
Sbjct: 146 MEEQFVTGRLYACVSSRPGQSGRCDGYI 173


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 262 IIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESH 378
           I+ V+++ +N E +    +VK +IV VD  PF  W++ +
Sbjct: 75  ILSVMHSFANKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 149 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSE-CSTRKPVSLMLCIMHLTMN 298
           P++I   ++ GG+TK +ALR++ G ++  S+      P+   L +MH   N
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPI---LSVMHSFAN 84


>SB_40040| Best HMM Match : hATC (HMM E-Value=3.7e-08)
          Length = 824

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 136 VCSGTP*XILPLLAYGRTFPSRWPF 62
           + SG     +PL +YGRT   RWP+
Sbjct: 469 ILSGDKGGAVPLFSYGRTTLQRWPY 493


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 521 AIPHRAFAGLRGESPRSVW 577
           A PH A +G+R  SPR +W
Sbjct: 108 ACPHHAVSGVRVSSPRGIW 126



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 521 AIPHRAFAGLRGESPRSVW 577
           A PH A +G+R   PRS+W
Sbjct: 139 AYPHHAVSGVRVSPPRSIW 157



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 521 AIPHRAFAGLRGESPRSVW 577
           A PH A +G+R   PRS+W
Sbjct: 201 ACPHHAVSGVRVSPPRSIW 219



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 521 AIPHRAFAGLRGESPRSVW 577
           A PH A +G+R   PRS+W
Sbjct: 232 ACPHHAVSGVRVSPPRSIW 250


>SB_51949| Best HMM Match : Toxin_14 (HMM E-Value=0.051)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 273 NINDTGLRVEHSDPQEKLPVSRRSARYLVFPPRERTEW 160
           ++ D  +RV+H +  EK  +S      + F PR +T W
Sbjct: 114 SLRDFSIRVKHRNRMEKSTLSEFLETRVCFTPRRKTLW 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,322,095
Number of Sequences: 59808
Number of extensions: 415288
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)