Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30363.Seq
(715 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 154 3e-37
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 154 3e-37
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 154 3e-37
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 154 3e-37
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 146 9e-35
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 58 3e-08
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 30 9.5
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 154 bits (373), Expect = 3e-37
Identities = 92/180 (51%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSAN----PLRSFTWWKY*VP 198
MGISRD+WHKRR TG + + ++ + RP+AN P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANTKIGPRRIHT---VRVR 49
Query: 199 CAASGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+
Sbjct: 50 GGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY 109
Query: 358 RQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 110 RQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 146 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 189
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 154 bits (373), Expect = 3e-37
Identities = 92/180 (51%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSAN----PLRSFTWWKY*VP 198
MGISRD+WHKRR TG + + ++ + RP+AN P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANTKIGPRRIHT---VRVR 49
Query: 199 CAASGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+
Sbjct: 50 GGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY 109
Query: 358 RQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 110 RQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 146 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 189
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 154 bits (373), Expect = 3e-37
Identities = 92/180 (51%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSAN----PLRSFTWWKY*VP 198
MGISRD+WHKRR TG + + ++ + RP+AN P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANTKIGPRRIHT---VRVR 49
Query: 199 CAASGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+
Sbjct: 50 GGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY 109
Query: 358 RQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 110 RQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 146 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 189
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 154 bits (373), Expect = 3e-37
Identities = 92/180 (51%), Positives = 114/180 (63%), Gaps = 11/180 (6%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSAN----PLRSFTWWKY*VP 198
MGISRD+WHKRR TG + + ++ + RP+AN P R T V
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANTKIGPRRIHT---VRVR 49
Query: 199 CAASGHR*LLLGIGMFN-------SQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPF 357
+R L L +G F+ +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+
Sbjct: 50 GGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY 109
Query: 358 RQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 110 RQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 146 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 189
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 146 bits (353), Expect = 9e-35
Identities = 85/170 (50%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Frame = +1
Query: 31 MGISRDHWHKRRATGWETCAHTQEEEV*XRASRCKHQARPSANPLRSFTWWKY*VPCAAS 210
MGISRD+WHKRR TG + + ++ + RP+AN
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKKRKY--------ELGRPAANT-------------KIG 39
Query: 211 GHR*LLLGI-GMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 387
R + + G +TRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY L
Sbjct: 40 PRRIHTVRVRGGCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 99
Query: 388 PLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
PLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 100 PLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 65.3 bits (152), Expect = 2e-10
Identities = 28/39 (71%), Positives = 33/39 (84%)
Frame = +2
Query: 77 GKRAPIRKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTK 193
GKR P KKRKY LGRPAANT++GP+RIH+VR RGG T+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCTR 54
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 126 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 169
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 58.0 bits (134), Expect = 3e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +3
Query: 450 EKSKDSKKILGKATSC*GXGALEEQFHTGRLLACVASRPGQCGRADGYI 596
+K D +K K +S LEEQF G+LLAC+ASRPGQCGRADGY+
Sbjct: 18 QKKYDERKKNAKISSL-----LEEQFQQGKLLACIASRPGQCGRADGYV 61
Score = 37.5 bits (83), Expect = 0.047
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +1
Query: 415 LTEAEEAIINKKRSQKTARKYLARQRLAKVXVL*KSNSTQG 537
LT EE I+NKKRS+K +KY R++ AK+ L + QG
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 29.9 bits (64), Expect = 9.5
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = -2
Query: 252 RVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRPXSYFLFLRMGA 85
R E PQ+ + V RS R L PPR RT+ W S AG + LR G
Sbjct: 414 RCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLRAGL 467
Query: 84 RFPAGGP 64
PAG P
Sbjct: 468 PAPAGAP 474
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,946,524
Number of Sequences: 237096
Number of extensions: 2065805
Number of successful extensions: 4748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4736
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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