BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30363.Seq (715 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 134 6e-32 >U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein, small subunitprotein 8 protein. Length = 208 Score = 134 bits (324), Expect = 6e-32 Identities = 79/163 (48%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Frame = +1 Query: 31 MGISRDHWHKRRATG-WETCAHTQEE-EV*XRASRCKHQARPSANPLRSFTWWKY*VPCA 204 MGISRD WHKR TG + H + + E+ A+ K A KY Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRL 60 Query: 205 ASGHR*LLLGIGMFNSQTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYT 384 SG+ +TRI+D +YNA+NNELVRTKTLVK AI+ VDA PFRQWYE+HY Sbjct: 61 DSGN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYA 118 Query: 385 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVXVL 513 LPL RKK AKL+E + AI+NKKRS T +KY RQ+ A V L Sbjct: 119 LPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDAL 161 Score = 87.8 bits (208), Expect = 7e-18 Identities = 40/61 (65%), Positives = 48/61 (78%), Gaps = 1/61 (1%) Frame = +2 Query: 77 GKRAPI-RKKRKYXLGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 253 G P+ KKRK+ LGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TR Sbjct: 15 GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74 Query: 254 K 256 K Sbjct: 75 K 75 Score = 44.0 bits (99), Expect = 1e-04 Identities = 22/47 (46%), Positives = 29/47 (61%) Frame = +3 Query: 513 LEEQFHTGRLLACVASRPGQCGRADGYIXXXXXXXXXXXXXXSKRAK 653 L EQF+TGRLLA ++S PGQ G+A+GYI +K+AK Sbjct: 162 LIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,673,503 Number of Sequences: 27780 Number of extensions: 296555 Number of successful extensions: 819 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 819 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1666201324 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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