Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30358.Seq
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 144 7e-35
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08) 30 1.4
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3) 29 2.4
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 3.2
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3) 27 9.7
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 9.7
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 144 bits (348), Expect = 7e-35
Identities = 66/89 (74%), Positives = 81/89 (91%)
Frame = +3
Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431
+DWKGLKITV LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV
Sbjct: 51 QDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVT 110
Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASQL 518
+AK+MR RSMAR+LSG+VKEILGT +
Sbjct: 111 NVAKVMRPRSMARHLSGTVKEILGTCQSV 139
Score = 99.1 bits (236), Expect = 3e-21
Identities = 45/51 (88%), Positives = 48/51 (94%)
Frame = +1
Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATR 255
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT+
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQ 51
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2
Query: 509 QSVGCTVEGRPPHDLIDDINSG 574
QSVGCTV+G PHD+ID INSG
Sbjct: 137 QSVGCTVDGMAPHDVIDKINSG 158
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 377 TVTRRLLKGSDDKGCC-----RGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGD 213
+++ + GSD+K CC G + LG+ + +HSD++ P+L LA F+ +
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDE 167
Query: 212 R 210
R
Sbjct: 168 R 168
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = -2
Query: 350 SDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTFLGDRPRGPILGAKDDVA 171
SD+K C R LS L ++ TL L S TF +P GP+ G K DVA
Sbjct: 924 SDEKRCIRAF-----LSSLRNPSDDEVLTLMALPIFEAISGTFTAVQPDGPLRGEKLDVA 978
Query: 170 P 168
P
Sbjct: 979 P 979
>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
Length = 924
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +3
Query: 249 HKDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLED- 425
H DWK L +++++ + QA V+P + +R E +++ + H + ED
Sbjct: 606 HSDWKSLGNYLRISLPSNQA--TVIPLGHDMTVREAVESTCQKRQLEPRAHYLRLGKEDN 663
Query: 426 --VIGIAKIMRNRSM 464
VIGI+ RN ++
Sbjct: 664 NGVIGISVTCRNDAL 678
>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
Length = 669
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Frame = +3
Query: 387 KNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTASQL--DVLWRAGRHMILLM 560
+ I+ + SL+ ++GIA+++RN MA Y+ + +LGT++ L VL R+ ++ M
Sbjct: 39 EKIERHKKTSLQGLMGIAQMIRN--MAGYVDDLWEILLGTSTPLPVGVLTTEERNALVKM 96
Query: 561 T 563
T
Sbjct: 97 T 97
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 270 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 401
++ ++ RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
Length = 193
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 521 CTVEGRPPHDLIDDINSG 574
C VE PPH++ D +N G
Sbjct: 156 CPVEPNPPHNMFDHVNLG 173
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 121 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 231
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,640
Number of Sequences: 59808
Number of extensions: 417482
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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