BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= psV30358.Seq (639 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 128 3e-30 Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 37 0.011 Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical pr... 33 0.23 Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical pr... 32 0.40 U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 30 1.2 U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2 U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2 U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.2 U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 30 1.2 AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 30 1.2 Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical pr... 29 3.7 Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical pr... 27 8.6 Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical pr... 27 8.6 U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protei... 27 8.6 AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine r... 27 8.6 >Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical protein JC8.3a protein. Length = 165 Score = 128 bits (310), Expect = 3e-30 Identities = 58/89 (65%), Positives = 77/89 (86%) Frame = +3 Query: 252 KDWKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVI 431 +DWKGLK+T +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I Sbjct: 51 QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTII 110 Query: 432 GIAKIMRNRSMARYLSGSVKEILGTASQL 518 IA+IMR RSMA+ L G+VKEILGTA + Sbjct: 111 KIARIMRPRSMAKKLEGTVKEILGTAQSV 139 Score = 100 bits (239), Expect = 1e-21 Identities = 45/60 (75%), Positives = 52/60 (86%) Frame = +1 Query: 103 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATRTGRVSRSLC 282 MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT+ + + C Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60 Score = 37.1 bits (82), Expect = 0.011 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = +2 Query: 506 SQSVGCTVEGRPPHDLIDDINSG 574 +QSVGCT++G+ PHD+I+ I +G Sbjct: 136 AQSVGCTIDGQHPHDIIESIANG 158 >Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical protein JC8.3c protein. Length = 50 Score = 37.1 bits (82), Expect = 0.011 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = +2 Query: 506 SQSVGCTVEGRPPHDLIDDINSG 574 +QSVGCT++G+ PHD+I+ I +G Sbjct: 21 AQSVGCTIDGQHPHDIIESIANG 43 Score = 34.3 bits (75), Expect = 0.075 Identities = 16/24 (66%), Positives = 19/24 (79%) Frame = +3 Query: 447 MRNRSMARYLSGSVKEILGTASQL 518 MR RSMA+ L G+VKEILGTA + Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSV 24 >Z98866-5|CAB11548.1| 436|Caenorhabditis elegans Hypothetical protein Y49E10.4 protein. Length = 436 Score = 32.7 bits (71), Expect = 0.23 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -1 Query: 117 KLRGHFVDYLVQLYTIITLNPNGWVWIPQGYRLNVQR 7 K R +D L +L TI GWVW+ G + NVQR Sbjct: 305 KCRKQKIDMLNELATIFKKRSFGWVWMEGGAQENVQR 341 >Z19152-7|CAA79539.2| 643|Caenorhabditis elegans Hypothetical protein B0464.6 protein. Length = 643 Score = 31.9 bits (69), Expect = 0.40 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 354 LKEPPRDRKKQKNIKH-NGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTASQLDVLW 530 L++ P KK + N+S+ D GI + + + + G E + T QLDVL Sbjct: 184 LQQSPSPNKKSPSYSQVMSNVSVSDTSGILEDTKGGWKSPAVYGKSNESIHTRKQLDVLL 243 Query: 531 RAGRHMILLMTSTAXF 578 R+ + I + +T+ F Sbjct: 244 RSNQDEIPVDMNTSTF 259 >U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resistance related protein1 protein. Length = 1540 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform e protein. Length = 1534 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform c protein. Length = 1534 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform b protein. Length = 1534 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resistance protein familyprotein 1, isoform a protein. Length = 1528 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug resistance-associatedprotein protein. Length = 1534 Score = 30.3 bits (65), Expect = 1.2 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Frame = -2 Query: 383 LFTVTRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLPVLVALAMSSPTF 222 +F + R L+ GSD + G NNS + V NC H+D T+P L + S F Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIPTLFLVIFSPILF 55 >Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical protein M01G12.6 protein. Length = 419 Score = 28.7 bits (61), Expect = 3.7 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +2 Query: 200 VLLVCLLKRWVMTLPR--PQGLEGSQDHCAADSS 295 +L++CLLKRW M L PQ + D+ + S Sbjct: 180 ILMICLLKRWKMNLVEKFPQNITKHMDYTPVNIS 213 >Z81498-2|CAB04085.1| 760|Caenorhabditis elegans Hypothetical protein F11A6.1b protein. Length = 760 Score = 27.5 bits (58), Expect = 8.6 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = +1 Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306 +R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++ Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123 >Z81498-1|CAB04086.1| 692|Caenorhabditis elegans Hypothetical protein F11A6.1a protein. Length = 692 Score = 27.5 bits (58), Expect = 8.6 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = +1 Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306 +R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++ Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123 >U12682-1|AAB63525.1| 692|Caenorhabditis elegans celfurPC protein protein. Length = 692 Score = 27.5 bits (58), Expect = 8.6 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%) Frame = +1 Query: 145 LRCVGGEVGATSSLAPKIGPLGLSPKKVGD------DIAKATRTGRVSRSLCS*QFKTDK 306 +R GG+V + LA K G L P GD D K +R+ R +RSL + Q + ++ Sbjct: 64 VRIAGGKVEEANRLANKYGYTNLGPIIPGDEYYLFRDDRKKSRSSRKTRSLSANQLQHEE 123 >AC024826-13|AAF60794.2| 305|Caenorhabditis elegans Serpentine receptor, class x protein12 protein. Length = 305 Score = 27.5 bits (58), Expect = 8.6 Identities = 8/31 (25%), Positives = 14/31 (45%) Frame = -1 Query: 129 FIWVKLRGHFVDYLVQLYTIITLNPNGWVWI 37 F+W GH + Y + + +P W W+ Sbjct: 131 FVWSMAIGHVIPYFWRETCYVAYDPVSWTWV 161 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,750,766 Number of Sequences: 27780 Number of extensions: 314092 Number of successful extensions: 845 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 845 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1416829972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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