Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30356.Seq
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.9  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.9  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   8.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 439 TQTIKTSSSSACISPLLDVNLS 504
           T T  T+SS+   +PL++ N+S
Sbjct: 11  TTTTTTTSSALNSTPLIEFNIS 32


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 439 TQTIKTSSSSACISPLLDVNLS 504
           T T  T+SS+   +PL++ N+S
Sbjct: 11  TTTTTTTSSALNSTPLIEFNIS 32



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 761 IICVESNTYTYFNXSR 714
           IIC ESN   YF  +R
Sbjct: 363 IICSESNRKFYFKRAR 378


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 156 H*SGKRIYPECTKLLDCGIVVLDYTGCIWTSIL 254
           H  G+ + P  T LL     V  Y+G +WT IL
Sbjct: 110 HTFGRFLAPNLTYLL-----VALYSGYVWTDIL 137


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 80  IFELSLCWRIYHLMRKIRLI 139
           +F + LC R+     KIRLI
Sbjct: 241 LFVIYLCGRVMEEQNKIRLI 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,562
Number of Sequences: 336
Number of extensions: 4280
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)