Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30356.Seq
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    29   1.1  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   4.3  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     26   5.6  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.8  

>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 702 WXKIPGXVKISISITFHTYNMDIRXLIVGT 791
           W K+P    IS  +TFH +N  IR LI  T
Sbjct: 122 WIKVPAKFVISYPLTFHIFN-GIRHLIWDT 150


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 264 DYSAKLMSRYNQCNQVQQCRNPTILCIQGISFFHFNDE 151
           D  +   SRYN C   +   +P     +G  F  F DE
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 286 YYILTEERLFSKIDVQIQPV*SSTTMPQSNNFVHSGYI 173
           YY ++  + FS+I VQ+QP  +    P +  F  + ++
Sbjct: 102 YYPISSIKKFSRIPVQLQPPLNKQNFPHNIEFETADFL 139


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 546 LDAKGRGSFIVADMGEVYIQQWRDTG 469
           LD++G     V D+G +Y  QWR  G
Sbjct: 420 LDSRGLTDRKVGDLGPIYGFQWRHFG 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,424,443
Number of Sequences: 5004
Number of extensions: 69760
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)