Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30356.Seq
(822 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062705-1|AAH62705.1| 98|Homo sapiens similar to DNA segment,... 72 2e-12
BC051802-1|AAH51802.1| 98|Homo sapiens similar to DNA segment,... 72 2e-12
BC095436-1|AAH95436.1| 108|Homo sapiens MGC71993 protein protein. 41 0.006
Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport ... 32 2.9
Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport ... 32 2.9
BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transpor... 32 2.9
AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transpor... 32 2.9
AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transpor... 32 2.9
AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transpor... 32 2.9
AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein. 32 2.9
AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein. 32 2.9
AY682083-1|AAT85832.1| 542|Homo sapiens voltage-gated sodium ch... 31 5.0
AY682082-1|AAT85831.1| 542|Homo sapiens voltage-gated sodium ch... 31 5.0
AY682081-1|AAT85830.1| 531|Homo sapiens voltage-gated sodium ch... 31 5.0
AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium ch... 31 5.0
AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein. 31 5.0
>BC062705-1|AAH62705.1| 98|Homo sapiens similar to DNA segment,
Chr 11, Brigham & Womens Genetics 0434 expressed
protein.
Length = 98
Score = 72.1 bits (169), Expect = 2e-12
Identities = 35/85 (41%), Positives = 53/85 (62%)
Frame = +1
Query: 1 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
GPKL+ CG+VLS WG+I L ++G+F+ + + L+ED+PF EK+ E+ + Y
Sbjct: 8 GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYE 63
Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
+ NC+IAA LYL+ + G FC
Sbjct: 64 QVSYNCFIAAGLYLL---LGGFSFC 85
>BC051802-1|AAH51802.1| 98|Homo sapiens similar to DNA segment,
Chr 11, Brigham & Womens Genetics 0434 expressed
protein.
Length = 98
Score = 72.1 bits (169), Expect = 2e-12
Identities = 35/85 (41%), Positives = 53/85 (62%)
Frame = +1
Query: 1 GPKLSLCGLVLSVWGIIQLTLMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYT 180
GPKL+ CG+VLS WG+I L ++G+F+ + + L+ED+PF EK+ E+ + Y
Sbjct: 8 GPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYE 63
Query: 181 LNAQNCWIAALLYLITLVVSGHQFC 255
+ NC+IAA LYL+ + G FC
Sbjct: 64 QVSYNCFIAAGLYLL---LGGFSFC 85
>BC095436-1|AAH95436.1| 108|Homo sapiens MGC71993 protein protein.
Length = 108
Score = 40.7 bits (91), Expect = 0.006
Identities = 22/65 (33%), Positives = 37/65 (56%)
Frame = +1
Query: 61 LMGVFYYIRAVALLEDLPFDEKNPPHSIEDFVIEVEKGYTLNAQNCWIAALLYLITLVVS 240
++G+F+ + + L+ED+PF EK+ E+ + Y + NC+IAA LYL+ +
Sbjct: 38 MLGIFFNVHSAVLIEDVPFTEKD----FENGPQNIYNLYEQVSYNCFIAAGLYLL---LG 90
Query: 241 GHQFC 255
G FC
Sbjct: 91 GFSFC 95
>Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein.
Length = 1462
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 948 YVNKMKDKTLWRWWAQYLESQGEMDA 973
>AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein.
Length = 1468
Score = 31.9 bits (69), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 545 WMRKVEDRSLWRIWERFTSSSGEIQA 468
++ K++D++LWR W ++ S GE+ A
Sbjct: 954 YVNKMKDKTLWRWWAQYLESQGEMDA 979
>AY682083-1|AAT85832.1| 542|Homo sapiens voltage-gated sodium
channel Nav1.6 protein.
Length = 542
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 604 IILKFXLKLE*VIYFNLDDGNSNNKXYIWPFNFGVKYL 717
I+ F L + +I L GN NK +WP NF YL
Sbjct: 106 ILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYL 143
>AY682082-1|AAT85831.1| 542|Homo sapiens voltage-gated sodium
channel Nav1.6 protein.
Length = 542
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 604 IILKFXLKLE*VIYFNLDDGNSNNKXYIWPFNFGVKYL 717
I+ F L + +I L GN NK +WP NF YL
Sbjct: 106 ILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYL 143
>AY682081-1|AAT85830.1| 531|Homo sapiens voltage-gated sodium
channel Nav1.6 protein.
Length = 531
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 604 IILKFXLKLE*VIYFNLDDGNSNNKXYIWPFNFGVKYL 717
I+ F L + +I L GN NK +WP NF YL
Sbjct: 106 ILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYL 143
>AF050736-1|AAD15789.1| 1980|Homo sapiens voltage-gated sodium
channel alpha subunit protein.
Length = 1980
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 604 IILKFXLKLE*VIYFNLDDGNSNNKXYIWPFNFGVKYL 717
I+ F L + +I L GN NK +WP NF YL
Sbjct: 256 ILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYL 293
>AB027567-1|BAA78033.1| 1980|Homo sapiens sodium channel protein.
Length = 1980
Score = 31.1 bits (67), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 604 IILKFXLKLE*VIYFNLDDGNSNNKXYIWPFNFGVKYL 717
I+ F L + +I L GN NK +WP NF YL
Sbjct: 256 ILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYL 293
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,213,235
Number of Sequences: 237096
Number of extensions: 2300067
Number of successful extensions: 7171
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7168
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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