Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30355.Seq
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0065 + 8736744-8738879 32 0.27
01_06_0937 + 33175966-33178020 29 2.5
10_08_0520 - 18495118-18498237 28 4.4
12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798... 27 5.8
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632... 27 5.8
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382... 27 5.8
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18... 27 5.8
01_01_1127 + 8930593-8932681,8932812-8933401 27 5.8
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118... 27 7.6
>10_05_0065 + 8736744-8738879
Length = 711
Score = 31.9 bits (69), Expect = 0.27
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVG 345
D + +W DYI FEI+ G + +Y R +G
Sbjct: 531 DAPELVWTDYIQFEIDAGELDRARQLYERLLG 562
>01_06_0937 + 33175966-33178020
Length = 684
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 244 SRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGML-KKDIVDEFIR 381
++DCN E + ++ + NG +P+ V Y +G+L ++D V+E I+
Sbjct: 538 TKDCNSEEALELLHGLVSNGVSPD-IVTYSSIIGVLSREDRVEEAIK 583
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 262 EIWADYINFEIENGNAPNSAVVYRRAV 342
+ WA Y FE+++GNA V +R V
Sbjct: 967 DFWALYYKFELQHGNADTQKDVLQRCV 993
>12_02_0841 +
23579344-23579394,23579522-23579584,23579717-23579826,
23580220-23580320,23580816-23580877,23580972-23581112,
23581388-23581523,23582257-23582284,23582665-23582728,
23582924-23583044,23583565-23583623,23583716-23583784,
23583875-23584015,23584130-23584194,23584345-23584441,
23584803-23584862,23585409-23585561,23586022-23586088,
23586174-23586284,23586689-23586799,23587370-23587567,
23587679-23587860
Length = 729
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 262 EIWADYINFEIENGNAPNSAVVYRRAVGML 351
+IW DY + +NG+ ++ +++RAV L
Sbjct: 262 DIWYDYAMWHAKNGSVDSAIKIFQRAVKAL 291
>09_02_0253 -
6319198-6319240,6319364-6319552,6319650-6319995,
6320811-6320893,6320977-6321074,6321384-6321461,
6321891-6322000,6322083-6322180,6323199-6323296,
6323403-6323463,6323688-6323831,6324103-6324206,
6324634-6324787,6324860-6324879,6324967-6325029,
6326521-6326632,6326711-6326796,6326872-6326899,
6327242-6327293,6329034-6329250
Length = 727
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 266 FGQIILILKLRMGMLQIQQLYIEELWACSRKILLMSLLEIKL 391
FG ++L L L + + + Y+E L+A ++ ++S+ +KL
Sbjct: 241 FGIVVLELDLSLLLYPFPKFYMETLFAKHERLCMLSIDHVKL 282
>04_04_1183 -
31537196-31537290,31537665-31537986,31538176-31538277,
31538826-31539071,31539385-31539506,31539588-31540344,
31540447-31540770,31540872-31541052,31541208-31541602,
31541877-31541942,31542225-31542377,31542593-31542691,
31542776-31542982,31543432-31543572,31543852-31544019,
31544302-31544395,31544479-31544585,31545140-31545274,
31545549-31545656,31545975-31546049,31546197-31546262,
31546500-31546556,31546678-31546702,31546809-31546889,
31546966-31547080,31547211-31547370,31547444-31547483,
31547599-31547780,31547905-31548234
Length = 1650
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 2 KTLYKKFQNCDNAILLAVKPKLLQKMYEHNG 94
+TLY +FQ C N L KP LL+ ++ G
Sbjct: 271 ETLYNRFQKCWNNELQKPKPWLLRALHSSLG 301
>02_01_0031 -
187798-187887,187996-188179,188468-188640,188917-189399,
189557-190213,190821-190837,191501-192041
Length = 714
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 259 KEIWADYINFEIENGNAPNSAVVYRRA 339
+E+W +Y N E++ G + + +Y RA
Sbjct: 673 RELWRNYYNMELKLGTSETANAIYWRA 699
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 262 EIWADYINFEIENGNAPNSAVVYRRAV 342
+ WA Y FE+++GNA V +R V
Sbjct: 820 DFWALYYKFELQHGNADTHKDVVQRCV 846
>06_03_0270 +
19009412-19009888,19009936-19011048,19011810-19011899,
19011928-19012027,19012135-19012333,19012559-19012679
Length = 699
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAV 342
N + W DYI E GN VY RA+
Sbjct: 340 NYDSWFDYIRLEESVGNKDRIREVYERAI 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,354
Number of Sequences: 37544
Number of extensions: 166274
Number of successful extensions: 406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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