Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30355.Seq
         (470 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059)          28   3.4  
SB_56669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)                 28   4.5  
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)                      28   4.5  
SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)               28   4.5  
SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)                     28   4.5  
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   5.9  
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               27   5.9  

>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 92   GLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTATKKFG 271
            GL  TR++  DF   P   + ++   +NI  + EK NL  +      A+ H   A K+ G
Sbjct: 1400 GLTYTRDVAWDFFLNPSCFVRIYSSEVNILDAVEKENLAHLMASMHLALRHQDGADKESG 1459


>SB_4319| Best HMM Match : Na_H_Exchanger (HMM E-Value=0.0059)
          Length = 410

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 298 SQFQN*YNLPKFLCCSPVMMHSTLITFSNCFQI*LFLRFFDIDHYFMKFNLCWWCPNK 125
           + F N   +  F  C  +  HS  + F N F+  + +        FM F LCWW PNK
Sbjct: 246 ASFDNVLCISGFGVCIGLSFHSGNLVF-NIFRAPIEVLIGLAFGVFMGF-LCWWFPNK 301


>SB_56669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 313 NSAVVYRRAVGMLKKDIVDEFIRDQTLSKIK 405
           N+  V+    G LKK  V EF++++T+ KI+
Sbjct: 6   NNENVHHPITGSLKKGSVFEFVKNETMKKIQ 36


>SB_23935| Best HMM Match : bZIP_Maf (HMM E-Value=0.76)
          Length = 715

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 11  YKKFQNCDNAI--LLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIM 169
           YKK  +   A   LL+    LLQ ++  + +++TRE   + +RTP  Q   HK++
Sbjct: 213 YKKLTDLVEAQNHLLSSGAPLLQHIHAQSAIQSTRE---ELVRTPEPQTTDHKVI 264


>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
          Length = 498

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
           W DY+++EI NG      +++ R V
Sbjct: 186 WRDYLDYEIANGEHRRVVILFERCV 210


>SB_27803| Best HMM Match : Pkinase (HMM E-Value=2.1e-08)
          Length = 318

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 38  AILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEKLNLKA 211
           AI  +  P  +  +  H  +K    L +DF   PP Q   H  +    KS    N K+
Sbjct: 202 AIAKSQSPSEVSVISHHKNIKKKTLLQKDFPNIPPPQSNFHPFVPTSLKSSSMYNNKS 259


>SB_6782| Best HMM Match : HAT (HMM E-Value=0.0082)
          Length = 319

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
           W DY+++EI NG      +++ R V
Sbjct: 239 WRDYLDYEIANGEHRRVVILFERCV 263


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 292 FQN*YNLPKFLCCSPVMMHSTLITFS 215
           F++ + +PK LC SP+ M S  IT S
Sbjct: 833 FRSDFEIPKVLCASPLGMKSKAITDS 858


>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 410 YHFIFDKV*SLINSSTISFLSMPTALL 330
           Y +++D   S I   TI F S PTALL
Sbjct: 128 YGYVYDITTSRITECTIEFSSSPTALL 154


>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 132 LIKSSYNSLVAFRPLCSYIFCKSFG 58
           + K+  N + AF+ +  YIFC+S+G
Sbjct: 140 MFKAFVNEMPAFQTIPLYIFCESYG 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,440
Number of Sequences: 59808
Number of extensions: 199918
Number of successful extensions: 487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)