Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30355.Seq
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC125127-1|AAI25128.1|  629|Homo sapiens PRPF39 protein protein.       30   3.5  
BC125126-1|AAI25127.1|  629|Homo sapiens PRPF39 protein protein.       30   3.5  
BC051886-1|AAH51886.1|  479|Homo sapiens PRPF39 protein protein.       30   3.5  
AK001289-1|BAA91603.1|  199|Homo sapiens protein ( Homo sapiens ...    30   4.6  
AB016840-1|BAC53587.1|  687|Homo sapiens crn protein.                  29   8.1  

>BC125127-1|AAI25128.1|  629|Homo sapiens PRPF39 protein protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
           W +Y+ FEIENG      V++ R V
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCV 340


>BC125126-1|AAI25127.1|  629|Homo sapiens PRPF39 protein protein.
          Length = 629

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
           W +Y+ FEIENG      V++ R V
Sbjct: 316 WKEYLEFEIENGTHERVVVLFERCV 340


>BC051886-1|AAH51886.1|  479|Homo sapiens PRPF39 protein protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 WADYINFEIENGNAPNSAVVYRRAV 342
           W +Y+ FEIENG      V++ R V
Sbjct: 166 WKEYLEFEIENGTHERVVVLFERCV 190


>AK001289-1|BAA91603.1|  199|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10427 fis, clone NT2RP1000348, weakly similar to
           REDUCED VIABILITY UPON STARVATION PROTEIN 161. ).
          Length = 199

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +2

Query: 14  KKFQNCDNAILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQE 193
           KKF +   ++++AVK +  Q + ++  L+A  E YE+  +T P   +LH+    +   +E
Sbjct: 58  KKFGSVFPSLIMAVKRRE-QALQDYRRLQAKVEKYEEKEKTGPVLAKLHQAREELRPVRE 116

Query: 194 KLNLK 208
               K
Sbjct: 117 DFEAK 121


>AB016840-1|BAC53587.1|  687|Homo sapiens crn protein.
          Length = 687

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRR 336
           D  K +W  YI+FEIE      +  +YRR
Sbjct: 512 DMPKVLWKSYIDFEIEQEETERTRNLYRR 540


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,130,788
Number of Sequences: 237096
Number of extensions: 986190
Number of successful extensions: 2364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2364
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)