Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30355.Seq
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical ... 28 2.9
Z82276-5|CAH60784.1| 261|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z70311-4|CAA94373.1| 541|Caenorhabditis elegans Hypothetical pr... 27 6.8
AL034365-3|CAA22261.1| 563|Caenorhabditis elegans Hypothetical ... 27 6.8
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr... 27 9.0
L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor pr... 27 9.0
AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical ... 27 9.0
AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dau... 27 9.0
AF047651-11|AAO61443.1| 446|Caenorhabditis elegans Abnormal dau... 27 9.0
AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dau... 27 9.0
>AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical
protein ZC132.6 protein.
Length = 302
Score = 28.3 bits (60), Expect = 2.9
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +2
Query: 2 KTLYKKFQNCDNAILLAVKPKLLQKMYEHNGLKATRELYED--FIRTPPTQIELH-KIMI 172
+ L K+ N ++ I ++ KLL++ +++ ++A +ELYE+ I Q+ H + I
Sbjct: 144 EALKNKYTNSESTIN-SLNEKLLKEKSKNDSIQAQKELYENLVIIIDQLRQLGEHLEDRI 202
Query: 173 NIEKSQEKLNLKAIRKCYECAVHHHGTAT 259
+ +K + K RK YE + GT T
Sbjct: 203 FKDLLLKKFSEKIRRKVYEQKLKDQGTWT 231
>Z82276-5|CAH60784.1| 261|Caenorhabditis elegans Hypothetical
protein K03D3.11 protein.
Length = 261
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 383 SLINSSTI-SFLSMPTALLYTTAEFGAFPFSISKLI*SAQISLL 255
S +N I +FL + ALL+ TA GAF F + ++ S QISLL
Sbjct: 51 STLNLMAICNFLVIVAALLFLTAFRGAFDFLV--VLSSIQISLL 92
>Z70311-4|CAA94373.1| 541|Caenorhabditis elegans Hypothetical
protein T25B9.5 protein.
Length = 541
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 175 IDHYFMKFNLCWWCPNKIFIQFPS 104
I HY + FN WC K++ +FP+
Sbjct: 114 IFHYQLDFNEDGWCCKKLYEKFPT 137
>AL034365-3|CAA22261.1| 563|Caenorhabditis elegans Hypothetical
protein Y69E1A.3 protein.
Length = 563
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 175 IDHYFMKFNLCWWCPNKIFIQFPS 104
I HY + FN WC K++ +FP+
Sbjct: 137 IFHYQLDFNEDGWCCKKLYEKFPT 160
>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical
protein F55G11.9 protein.
Length = 1431
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 155 LHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTA-TKKFGQIILILKLRMGMLQIQQLYI 331
L K+ N EK+ L+L+AIR + H+G + FG I + K G + I +
Sbjct: 452 LVKVYTNGEKAVNGLSLRAIRGQVSILLGHNGCGKSTTFGMITGMHKATEGRVIIGGIDA 511
Query: 332 EELWACSRKIL 364
A +RK++
Sbjct: 512 NSHRAAARKMI 522
>L23110-1|AAA03544.1| 744|Caenorhabditis elegans BMP receptor
protein.
Length = 744
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +1
Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
+CC S+ +CN + +N ++ ++ NSA+++ + + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228
>AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical
protein C47F8.5 protein.
Length = 368
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 220 FSNCFQI*LFLRFFDIDHYFMKFNLCW 140
FSN FQI L+ R I +F+ F L W
Sbjct: 3 FSNLFQIFLWARVAVIASFFITFLLLW 29
>AF047651-12|AAN63460.1| 592|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform c protein.
Length = 592
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +1
Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
+CC S+ +CN + +N ++ ++ NSA+++ + + +D+F
Sbjct: 29 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 76
>AF047651-11|AAO61443.1| 446|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform d protein.
Length = 446
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +1
Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
+CC S+ +CN + +N ++ ++ NSA+++ + + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228
>AF047651-10|AAC02726.1| 744|Caenorhabditis elegans Abnormal dauer
formation protein4, isoform a protein.
Length = 744
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +1
Query: 229 VCCASSRDCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
+CC S+ +CN + +N ++ ++ NSA+++ + + +D+F
Sbjct: 181 MCCCSTNNCNMPDLIEMVNPSLKK-DSDNSALLWASTPSNMDLESLDKF 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,888
Number of Sequences: 27780
Number of extensions: 173984
Number of successful extensions: 439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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