Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30355.Seq
(470 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 30 0.91
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c... 29 1.6
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 2.8
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 28 2.8
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 27 6.4
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 27 6.4
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 27 8.5
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 29.9 bits (64), Expect = 0.91
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKK 357
N ++W Y +FE++N + + V+ RAV +L +
Sbjct: 90 NTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPR 123
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
D + +W YI+FEI G + +Y R + K
Sbjct: 480 DMPELLWKTYIDFEISEGELERTRALYERLLDRTK 514
>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 413
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 277 YINFEIENGNAPNSAVVYRRAVGMLKKDIVDE 372
Y FE++N + +VY RA+ ML KD+ +E
Sbjct: 212 YAKFEMKNSQVSLARIVYERAIEML-KDVEEE 242
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKKDIVDEF 375
N +W Y FE+ N + ++ V+ RAV +L + VD+F
Sbjct: 105 NHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPR--VDQF 142
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 265 IWADYINFEIENGNAPNSAV--VYRRA 339
IW Y N E E+GN P +V V+ RA
Sbjct: 1630 IWVAYFNLENEHGNPPEESVKKVFERA 1656
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
[Arabidopsis thaliana]
Length = 2603
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 146 QIELHKIMINIEKSQEKLNLKAIRKCYECAVHHHGTATKKFGQIILILKLRMGMLQ 313
++EL KI + ++ + KL L IRK C+ + T ++ G++ +I R ++Q
Sbjct: 1997 EVELAKINLEEKERERKLLLDDIRKLSPCSDNMDDTHIEREGELWMISTRRSILVQ 2052
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 241 SSRDCNKEIWADYINFEIENGNAPNSAVVYRRAV 342
S N + W DY+ E GN +Y RA+
Sbjct: 322 SKNPLNYDSWFDYVRLEESVGNKDRIREIYERAI 355
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
D + +W YI+FEI G + +Y R + K
Sbjct: 510 DMPELLWKTYIDFEISEGEFEKTRALYERLLDRTK 544
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 256 NKEIWADYINFEIENGNAPNSAVVYRRAVGMLKK 357
N +W Y FE++N N+ V+ R+V +L +
Sbjct: 111 NHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPR 144
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 250 DCNKEIWADYINFEIENGNAPNSAVVYRRAVGMLK 354
D + +W YI+FEI G + +Y R + K
Sbjct: 523 DMPELLWKAYIDFEISEGELERTRALYERLLDRTK 557
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 26.6 bits (56), Expect = 8.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 38 AILLAVKPKLLQKMYEHNGLKATRELYEDFIRTPPTQIELHKIMINIEKSQEK-LNLKAI 214
A LL V LLQ+ ++NG K L + + + HK I+ +K + LNL +
Sbjct: 1243 AYLLGVVTSLLQQQTDYNGTKKVLGLISERAKDTSSSKMKHKRKISNQKGRNSWLNLDEV 1302
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,517,067
Number of Sequences: 28952
Number of extensions: 150493
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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