Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30352.Seq
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.3  
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|...    25   9.8  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 479 VKVADEAVKESTQRRIRTFVDPRPTKGVHKEMRVKKEALYHLSAFFPSQF 628
           +K+ D  + ++ Q+    F  P P K    +  +   +LYH S F   +F
Sbjct: 726 LKIIDNCIDKNMQKSQEGFQGPSPFKADENDEDIFIISLYHSSLFLNLKF 775


>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 476 LVKVADEA--VKESTQRRIRTFVDPRPTKGVHKEMRVKK 586
           +V+++DE   ++E  +  ++  +DPR  +   KE+  KK
Sbjct: 127 MVELSDEPLWIREDAREAMKQHLDPRQDEAFRKELENKK 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,167
Number of Sequences: 5004
Number of extensions: 41552
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)